Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0220
         (272 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62710.1 68414.m07078 vacuolar processing enzyme beta / beta-...    26   3.1  
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    25   9.5  

>At1g62710.1 68414.m07078 vacuolar processing enzyme beta / beta-VPE
           identical to SP|Q39044 Vacuolar processing enzyme,
           beta-isozyme precursor (EC 3.4.22.-) (Beta-VPE)
           {Arabidopsis thaliana}
          Length = 486

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  DHYGXLXQLTFRNVTRISRVCGNGISR 126
           +H G L Q   +++   + VC NG+S+
Sbjct: 430 EHCGSLTQYGMKHMRAFANVCNNGVSK 456


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 199 CGPPGXTEPRLGRAHAC 249
           CGPPG  +  + RA AC
Sbjct: 421 CGPPGTGKTLIARALAC 437


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,964,786
Number of Sequences: 28952
Number of extensions: 48426
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 222240128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)