Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0219
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.7  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   9.9  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -2

Query: 284  LIHRLPLSKFSSITILNSNIIMSVLYYKNQLFFF*NKFRKETYEQNVLTVRYL 126
            L+HR  +  F  I+++N N  MS L  +   FF+ +K  K  ++  V+TV +L
Sbjct: 1151 LLHRKVVICFL-ISVINQNFWMSTLISQAWRFFWGSKLTK-LWKIVVMTVSFL 1201


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 170 ETYFKKKKVGFYNRGPT 220
           ET+F +  VGFY++G T
Sbjct: 83  ETFFSRSLVGFYDQGYT 99


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 311 EVVIY*IYRLIHRLPLSKFSSITILNSNIIM 219
           +V  Y IY+L+ ++P   FSS   L  N ++
Sbjct: 147 DVCFYVIYKLVEQIPEISFSSNAFLAVNKLL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,807
Number of Sequences: 5004
Number of extensions: 32956
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)