Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0218
         (552 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 105 NLQSLKVCLTFHFRHARRGIDAISLAPVETAP 200
           +L ++++C        RRG   + L PV + P
Sbjct: 200 DLNAVRLCFQVFLEGERRGKFTVPLTPVVSEP 231


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 47  VYNFSNGTLSVCVLNDRHTQF 109
           + +FS      CVL+D  TQF
Sbjct: 248 IEDFSGYIKPKCVLSDHGTQF 268


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 183 APEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFE 58
           +PE+   S D     E  N    + + +    +T T   PFE
Sbjct: 123 SPEVKDSSRDRPFTCEVCNRSFGYKHVLQNHERTHTGEKPFE 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,082
Number of Sequences: 336
Number of extensions: 2485
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)