Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0218
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    32   0.065
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.34 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   1.8  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    26   4.2  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.6  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   7.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.8  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 250 MFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACR 143
           ++  F FLH R +A + G  S  +R++A+I  +  R
Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGAR 696


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 44  FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 136
           F+ N   G L+V   N +  +FT F+G FDF
Sbjct: 2   FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 63  FEKLYTKWSCERIESTLHSL 4
           F+K +T   CERIESTLH L
Sbjct: 510 FKKKFTT-ICERIESTLHEL 528


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 121 FKLCKLCMAIVQNTNTQCPVRKVIHKMELRENREHTTLVD 2
           F LCKL MA    TNT C   + +   EL     +T +VD
Sbjct: 372 FGLCKLNMAKTDRTNTFCGTPEYL-APELLLGHGYTKVVD 410


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 105 NLQSLKV--CLTFHFRHARRGIDAISLA 182
           NL+SL V  CL +HF ++  G+D+ +++
Sbjct: 216 NLKSLYVELCLVYHFHNSHLGMDSSTVS 243


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 114 FVNCVWRSFKTQTLNVPFEKLY 49
           F+NC W  F  +     FEKLY
Sbjct: 185 FINCNWPIFYKKQYMESFEKLY 206


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 217 SLAHDGGAVSTGARDIASI 161
           SL++DG  +S G +DIAS+
Sbjct: 553 SLSYDGKFISPGIKDIASL 571


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -3

Query: 265 DDPPDMFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACRK*KVKHTFKLCKLCMAIVQ 86
           DD  D F  F+FL   SLA     + T   ++  I         V H+  L    +AI+ 
Sbjct: 235 DDLEDTFRSFSFLELHSLAIKLSKLVTCKNEVVPI--------MVSHSPALFVGILAILY 286

Query: 85  NTNTQCPV 62
           + N  CP+
Sbjct: 287 SGNAYCPI 294


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 303 RISNRNPLLASALTIRRTCFLCSLFYI 223
           RI NR+ L++  +  R+    CS F+I
Sbjct: 897 RIDNRSDLISKQIMSRKVFINCSSFFI 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,418
Number of Sequences: 5004
Number of extensions: 39508
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)