Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0218
(552 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 31 0.63
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 1.9
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05) 29 3.3
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033) 29 3.3
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 28 4.4
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 27 7.7
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 118 KLCKLCMAI-VQNTNTQCPVRKVIHKMELRENREHTTLVD 2
+ CK+C VQ N QCP+ ++ R N + TLVD
Sbjct: 55 EFCKMCFTQNVQEANLQCPMCRIRISSWARRNARNGTLVD 94
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -1
Query: 240 CSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPF 61
CSL + A F R P ++ R+ D HV ++ P+ + K + L VP
Sbjct: 1653 CSLIGLYTRRRELAAAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRQLAVPA 1712
Query: 60 EKLYTKWSCE 31
L C+
Sbjct: 1713 TALRAPGQCK 1722
>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = -1
Query: 258 RRTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQ 79
R+ L SL + A F R P ++ R+ D HV ++ P+ K +
Sbjct: 701 RKATMLVSLIGLYTRKRELAAAFTRTPAVNQRATDPHVVADDVTPPARPPLAATEQTKDR 760
Query: 78 TLNVPFEKLYTKWSCE 31
L VP L C+
Sbjct: 761 PLAVPATALRAPGQCK 776
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = -1
Query: 258 RRTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQ 79
R+ L SL + A F R P ++ R+ D HV ++ P+ + K +
Sbjct: 706 RKATLLVSLIGLYTRRRELAAAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTKDR 765
Query: 78 TLNVPFEKLYTKWSCE 31
L +P L C+
Sbjct: 766 PLAIPATALRAPGQCK 781
>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
Length = 1264
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = -1
Query: 243 LCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVP 64
L SL + H A F R P + R+ D HV ++ P+ + + + L VP
Sbjct: 869 LVSLIGLYTHRRELAAAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVP 928
Query: 63 FEKLYTKWSCE 31
L C+
Sbjct: 929 ATALRPPGQCK 939
>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
Length = 745
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = -1
Query: 243 LCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVP 64
L SL + H A F R P + R+ D HV ++ P+ + + + L VP
Sbjct: 521 LVSLIGLYTHRRELAAAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVP 580
Query: 63 FEKLYTKWSCE 31
L C+
Sbjct: 581 ATALRPPGQCK 591
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -1
Query: 198 ARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCE 31
A F R P ++ R+ D HV ++ P+ + K + L VP L C+
Sbjct: 766 AAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRPLAVPATALRAPGQCK 821
>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 669
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = -1
Query: 198 ARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCE 31
A F R P ++ R+ D HV ++ P+ + K + L +P L C+
Sbjct: 539 AAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTKDRPLAIPATALRAPGQCK 594
>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 183 PVETAPPS*ASDRRCKKVNTGNMSGGSSTPMRAKDSCSK 299
P P ASDR K + GN+S S K +CSK
Sbjct: 182 PKHPLPVHIASDRALKLMLLGNVSANQSETYLKKTACSK 220
>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 183 APEISHRSLDEHVESEKSNTPSNFV-NCVWRSFKTQTLNVPFEKLYTKWSCE 31
+P++S + LD + + T + ++ N W + +T ++ E++YT WS E
Sbjct: 335 SPDLSRQDLDHGISRQ---TFTQYIRNQTWITGQTNQVSHAIEQVYTDWSNE 383
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,866
Number of Sequences: 59808
Number of extensions: 324817
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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