Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0218
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical ...    30   1.3  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    29   2.9  
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    29   2.9  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    29   2.9  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    29   2.9  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    29   2.9  
Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    27   9.0  

>AF067608-5|AAK95865.1|  523|Caenorhabditis elegans Hypothetical
           protein B0511.8 protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 470 EHAPA-SAQAX*XYRPPNYQRLHFPHDPE 387
           E+ PA SA A   YRPP Y++ H  H+P+
Sbjct: 40  ENVPAKSANASTVYRPPYYRKPHQHHEPK 68


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 125 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVR 256
           VF+  +  CS+ + CDI+   RNR              + KHVR
Sbjct: 127 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVR 170


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 125 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVR 256
           VF+  +  CS+ + CDI+   RNR              + KHVR
Sbjct: 175 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVR 218


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 125 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVR 256
           VF+  +  CS+ + CDI+   RNR              + KHVR
Sbjct: 124 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVR 167


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 125 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVR 256
           VF+  +  CS+ + CDI+   RNR              + KHVR
Sbjct: 133 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVR 176


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 125 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVR 256
           VF+  +  CS+ + CDI+   RNR              + KHVR
Sbjct: 126 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVR 169


>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 99  WRSFKTQTLNVPFEKLYT 46
           WR F+T TL +  +K+YT
Sbjct: 184 WREFETNTLKIKLKKMYT 201


>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 300 ISNRNPLLASALTIRRTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTP 121
           +S R+P   S  + RR+  +  LF++      TE   LR+P   H S D  + + K   P
Sbjct: 149 VSLRSPT-RSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLP 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,849
Number of Sequences: 27780
Number of extensions: 241710
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)