Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0218
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi...    33   0.096
At5g20050.1 68418.m02387 protein kinase family protein contains ...    32   0.22 
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    29   1.6  
At1g51920.1 68414.m05853 expressed protein                             29   2.1  
At5g35735.1 68418.m04276 auxin-responsive family protein similar...    29   2.7  
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden...    29   2.7  
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce...    27   6.3  
At5g60280.1 68418.m07555 lectin protein kinase family protein co...    27   8.3  
At3g18550.1 68416.m02359 TCP family transcription factor, putati...    27   8.3  

>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 487

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = -1

Query: 294 NRNPLLASALTIRRTCFLCSLFYID--DHSLMTEARFLRAPEISHRSLDEHVESEKSNTP 121
           NR   L S  T + T + CS   +D  + +L    R + +P      L+E++     +  
Sbjct: 9   NRFTYLTS--TAKLTRYFCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPS 66

Query: 120 SNFVNCVWRSFKTQTLNVPFEKLYTKWSCERIESTLH 10
           SN V  V  S K +T      + ++ WSC+ + S+LH
Sbjct: 67  SNLVTQVIESCKNETSPRRLLRFFS-WSCKSLGSSLH 102


>At5g20050.1 68418.m02387 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 452

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 277 RIGVDDPPDMFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACRK*KVKHTFKLCKLCM 98
           R+ V++PPD   V   L    LA D    STG R + +IP+    +   +  F+L  +C 
Sbjct: 391 RVPVNEPPDSDVVVVDL----LAADDDDASTGVRRVVNIPKLQIHR---ERNFRLSSICS 443

Query: 97  AIV 89
           +I+
Sbjct: 444 SII 446


>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 108 NCVWRSFKTQTLNVPFEK 55
           NCVWR F T  L  P+EK
Sbjct: 69  NCVWRFFSTPQLENPYEK 86


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 286 IPVRNSNAVMSSPFGFLISHRPMSKSCXYRERRPSGSCGKC 408
           +P+  SNA    P   + S RP+  +C   E  P GSC +C
Sbjct: 23  LPLSQSNATRI-PRAPISSRRPICPACVCCEPAPLGSCCRC 62


>At5g35735.1 68418.m04276 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 404

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 8   ECSVLSIL-SQLHFVYNFSNGTLSV 79
           +CS LS L S LH+ YN  NGT+S+
Sbjct: 42  DCSDLSALGSFLHWTYNEQNGTVSI 66


>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
           identical to Fe(II) transport protein [Arabidopsis
           thaliana] gi|1353266|gb|AAB01678; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 339

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 11  CSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLST 148
           C++  +++ L F   F    L  C+L   +T   KF   F F+++T
Sbjct: 212 CTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTT 257


>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
           protein (AIR12) identical (with 7 residue gap) to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 5   NECSVLSIL-SQLHFVYNFSNGTLSV 79
           + C  L +L S LH+ YN SN +LSV
Sbjct: 62  DSCEDLPVLNSYLHYTYNSSNSSLSV 87


>At5g60280.1 68418.m07555 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain, and
           PF00069: Protein kinase domain
          Length = 657

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 159 GIDAISLAPVETAPPS*ASDRRCKKVNTGNMSGGS 263
           GID  SL  VE+AP S  SD++    +   +SG S
Sbjct: 157 GIDVNSLTSVESAPASYFSDKKGLNKSISLLSGDS 191


>At3g18550.1 68416.m02359 TCP family transcription factor, putative
           similar to teosinte branched1 protein GI:13649866
           [Danthoniopsis dinteri]
          Length = 434

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -1

Query: 297 SNRNPLLASALTIRRTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTP 121
           S+  P+L S  T    C L S++ +DD    T     R  ++  RS+    +  +  TP
Sbjct: 222 SHIRPVLGSMDTSSDLCELASMWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTP 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,116
Number of Sequences: 28952
Number of extensions: 217964
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)