Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0217
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.58 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.58 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.58 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.58 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.58 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.58 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.58 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.58 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.58 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.8  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   5.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   5.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   9.5  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   9.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 80  RSTPPLSTPSNSNATKSSGL 99


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGL 332
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 97  ASGGTATALRNAGLTVQDVSD 159
           +S  TATA+ +A +T+Q+VS+
Sbjct: 251 SSPTTATAIASATVTIQNVSN 271


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 97  ASGGTATALRNAGLTVQDVSD 159
           +S  TATA+ +A +T+Q+VS+
Sbjct: 199 SSPTTATAIASATVTIQNVSN 219


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 97  ASGGTATALRNAGLTVQDVSD 159
           +S  TATA+ +A +T+Q+VS+
Sbjct: 382 SSPTTATAIASATVTIQNVSN 402


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 517 ISACAQSRLMMFVLFDFFDYSIVVGR 440
           +S+  Q+ + +  LFD  DYS  + R
Sbjct: 102 LSSATQASIEIDSLFDGIDYSTTITR 127


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 517 ISACAQSRLMMFVLFDFFDYSIVVGR 440
           +S+  Q+ + +  LFD  DYS  + R
Sbjct: 102 LSSATQASIEIDSLFDGIDYSTTITR 127


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 379 PMSMFSTASATVTSGLDTVWTN 314
           P++  S ASA   S LD  W +
Sbjct: 359 PLTSLSLASAQTLSELDLSWNS 380


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 173 GALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRP 45
           G +V   TS  V  A  ++    PLA  CR +   + A  S P
Sbjct: 223 GRIVERFTSDRVHAALVTSPRARPLARTCRDNRLLVLAGTSSP 265


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 411  TTTGSPSSVTRPTTML*SKKSKRTN 485
            TTT   ++ TRPTT   + +   TN
Sbjct: 1054 TTTTRRTTTTRPTTTSTTTRPTTTN 1078


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 269 TFHVFWSESD 240
           TF+ FW +SD
Sbjct: 446 TFNTFWQQSD 455


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 391 RVTPPMSMFSTASATVTSGLDTVWTNGYRLQTXTLXXSYF*RFMSSGQSRIIEL 230
           R+  P+S   T  +  +  ++  +T+G+ L + +L    F R     Q RI  L
Sbjct: 4   RICIPISSGRTNGSNFSKFINCHYTSGHLLGSSSLPLRSFYRSRIRYQGRISSL 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,744
Number of Sequences: 336
Number of extensions: 2036
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)