Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0217
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   109   3e-25
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   0.81 
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    26   3.3  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   5.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   5.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   10.0 

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  109 bits (262), Expect = 3e-25
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +1

Query: 19  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 198
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 199 TLHPAVHAGILARLSDSDQK 258
           TLHPAVH GILAR   SD+K
Sbjct: 63  TLHPAVHGGILARDIPSDEK 82



 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 28/49 (57%), Positives = 37/49 (75%)
 Frame = +3

Query: 255 EDMKRQKYXXXSVXVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 401
           +D+  Q      + VCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 82  KDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 407 KNHDRVTVVCXPADYDAVVKEIKENKHHQTTLGT 508
           KNH RVT++  PADY     +   +K  Q    T
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQDDRNT 166


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 135 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 227
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 388 VTPPMSMFSTASATVTS-GLDTVWTNGYR 305
           V PP+S F +AS  V   G   +W NGYR
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYR 182


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 481 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 365
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 445 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 302
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 466 RNQREQTSSDDFGHRQRLALKAFTHTS 546
           R +RE++ S  F H  R ++   +H+S
Sbjct: 167 RERRERSISPSFSHHSRTSISGQSHSS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,127
Number of Sequences: 5004
Number of extensions: 33577
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)