Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0217
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 87 7e-18
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 31 0.62
10_08_0415 - 17761594-17762382 30 1.1
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 29 2.5
09_04_0652 - 19227686-19227926,19229368-19232294 28 5.8
08_01_0621 - 5426210-5427787 28 5.8
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 28 5.8
03_01_0112 + 902459-902770,903275-903280 28 5.8
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 7.7
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 7.7
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 87.4 bits (207), Expect = 7e-18
Identities = 43/75 (57%), Positives = 52/75 (69%)
Frame = +1
Query: 13 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 192
K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 193 VKTLHPAVHAGILAR 237
VKTLHP+VH GILAR
Sbjct: 106 VKTLHPSVHGGILAR 120
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 291 VXVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 401
V V NLYPF V+ ++ D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 31.1 bits (67), Expect = 0.62
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +3
Query: 489 IRRLWAQAEISPEGVHSY 542
+++LWA AE++P+G+HS+
Sbjct: 833 LQQLWATAEVNPQGIHSH 850
>10_08_0415 - 17761594-17762382
Length = 262
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 102 WRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIR 245
WRY+ A R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +3
Query: 69 PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTCWDLS 233
P G WP + Y +S PHS ++ V H G A G S LS
Sbjct: 63 PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122
Query: 234 SIIRL*PEDMKRQ 272
S P +RQ
Sbjct: 123 SASSNPPPTPRRQ 135
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 123 SERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 224
SE+ P S C S + ++G + GTCW
Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 460 YSIVVGRVTDDGDPVVVLGXARRRVTPP 377
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 119 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 12
AV PP+A CRPH RL + V + L R+ +
Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 189 TSEHLRCSRDVRHILNCEAGVPK 121
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 133 RRSEAPWRYRHWQSTAGHIPTGS 65
RR PW++ HWQ+ G + + S
Sbjct: 20 RRPVHPWQWHHWQNLLGLLSSSS 42
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/74 (29%), Positives = 27/74 (36%)
Frame = +3
Query: 21 SSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGEN 200
S R DG + V PA+ RH R SSR GH + GD SG
Sbjct: 707 SPSRDSHDGEKTATS--VHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRK 763
Query: 201 FTSSGTCWDLSSII 242
+G W +I
Sbjct: 764 GAPAGKGWQEIGVI 777
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,249
Number of Sequences: 37544
Number of extensions: 258005
Number of successful extensions: 856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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