Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0217
(557 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 115 2e-26
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.2
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 27 6.9
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 27 6.9
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 27 6.9
AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical ... 27 6.9
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 115 bits (277), Expect = 2e-26
Identities = 55/81 (67%), Positives = 67/81 (82%)
Frame = +1
Query: 16 LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRV 195
LA++SVSDKTGL+ LA L GL LIASGGTA A+R+ G+ V DV+D+T+ PEMLGGRV
Sbjct: 7 LAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEMLGGRV 66
Query: 196 KTLHPAVHAGILARLSDSDQK 258
KTLHPAVH GILAR ++SD+K
Sbjct: 67 KTLHPAVHGGILARDTESDRK 87
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +3
Query: 255 EDMKRQKYXXXSVXVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 401
+D+++ SV VCNLYPF +TV D +V +AVENIDIGGVTLLRA
Sbjct: 87 KDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135
Score = 41.1 bits (92), Expect = 5e-04
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +2
Query: 407 KNHDRVTVVCXPADYDAVVKEIK 475
KNH+RV+V+C PADYD ++ E+K
Sbjct: 138 KNHERVSVICDPADYDHIISELK 160
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 508 RQRLALKAFTHTSDYD 555
RQ LALKAF HT+ YD
Sbjct: 169 RQLLALKAFEHTTSYD 184
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +3
Query: 318 VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 497
+Q +P AVE+ ++ V L A P GSP V T + ++K K
Sbjct: 15783 IQVTDRPAAPGKPAVEDQNVDSVRLRWAAPTNDGGSP--VRNYTVEMCTEKGK------- 15833
Query: 498 LWAQAEISPEGVHSYFGL*P 557
W +AE++ + + F L P
Sbjct: 15834 TWTKAEVTKQAFITLFNLVP 15853
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +3
Query: 318 VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 497
+Q +P AVE+ ++ V L A P GSP V T + ++K K
Sbjct: 15783 IQVTDRPAAPGKPAVEDQNVDSVRLRWAAPTNDGGSP--VRNYTVEMCTEKGK------- 15833
Query: 498 LWAQAEISPEGVHSYFGL*P 557
W +AE++ + + F L P
Sbjct: 15834 TWTKAEVTKQAFITLFNLVP 15853
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 108 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 221
Y+H A H+S HH +TG R +N T + C
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 98
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 108 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 221
Y+H A H+S HH +TG R +N T + C
Sbjct: 61 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 98
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 108 YRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTC 221
Y+H A H+S HH +TG R +N T + C
Sbjct: 35 YQHQALPVTMHTSTSSAHHTTTGHGRGRRKNSTINLVC 72
>AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical
protein C41H7.2 protein.
Length = 170
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 202 KFSPDLRASPVLS*CPTHLEL*GRRSEAPWRYRHWQSTAGH 80
KF R P S C T + G +EAP +R Q+TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -1
Query: 185 PSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPX 6
PS S A S +RP +++ A P A H+D+LF E LRR +FP
Sbjct: 6 PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57
Query: 5 D 3
+
Sbjct: 58 E 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,188
Number of Sequences: 27780
Number of extensions: 202026
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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