Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0217
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.4  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  LLSLAKSLSECGLQLIASGGTATALRNA 132
           LLS  +S+SEC L   +S  +  + RN+
Sbjct: 166 LLSKRRSVSECSLGTASSTSSTASSRNS 193


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 169 APEMLGGRVKTLHPAV 216
           AP MLGGR  T +  V
Sbjct: 340 APHMLGGRTDTTYRVV 355


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 466 FDYSIVVGRVTDDGDPVVVLGXARRR 389
           F   I    + D+G P V+LG + RR
Sbjct: 73  FTGEISPAMLLDNGIPWVILGHSERR 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,826
Number of Sequences: 438
Number of extensions: 2286
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)