Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0216
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   125   4e-30
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    39   4e-04
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    32   0.049
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   3.2  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.8  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  125 bits (302), Expect = 4e-30
 Identities = 67/101 (66%), Positives = 76/101 (75%), Gaps = 3/101 (2%)
 Frame = +1

Query: 256 QFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGS 426
           QFED  +LP ILNALEV+   + RLVLEVAQH+GE TVRTIAM GT GLVRG  V+D+GS
Sbjct: 68  QFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGS 127

Query: 427 PIRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAEAP 549
           PI IPVG  TLGRI+NVIGEP   RGP    +   IHA+AP
Sbjct: 128 PISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAP 168


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 331 VAQHLGEXTVRTIAMXGTXGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGP 507
           +A +L   TV  + + G   LVR G+ V  +   + +PVG   LGR+++ +G P   +GP
Sbjct: 90  MALNLEADTVGCV-LFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148

Query: 508 TPPTRLLAIHAEAP 549
              T    +  +AP
Sbjct: 149 IKTTERRRVQLKAP 162


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 32.3 bits (70), Expect = 0.049
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 322 VLEVAQHLGEXTVRTIAMXGTXGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPXXX 498
           VLEVA H     V      GT G+ VR   +  +G  +RIPV  + LGR+ N  G P   
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLP-ID 117

Query: 499 RGP 507
           +GP
Sbjct: 118 KGP 120


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 132 NPFQNVEKSLQSMPXTRGTMLLNLQEKAKVRLLPLSV 242
           NPF N ++S+++MP      L+NLQE + +   P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 PTFGGXHSSDHCHGRYXRLSPW 401
           P + G ++  H HG    L+PW
Sbjct: 311 PPYFGSYTKTHSHGSNVLLNPW 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,316
Number of Sequences: 5004
Number of extensions: 40271
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)