Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0216
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 30 1.1
01_05_0382 - 21661973-21662124,21662367-21662659,21662994-216631... 30 1.4
11_02_0015 - 7355989-7357092 29 1.9
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 29 1.9
07_01_0661 + 4968089-4969741 29 1.9
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 29 1.9
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 29 1.9
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 29 2.5
06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808 29 2.5
04_03_0881 + 20528257-20528760,20528837-20529283 29 2.5
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 29 3.3
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 28 4.3
11_01_0460 + 3561490-3564104,3564162-3564558 28 5.7
10_08_0742 + 20244984-20247008 28 5.7
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713 27 7.5
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 27 7.5
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 446 PTGIRMGXPESSTGCPRTKPXVPXMAMVRTVXSP 345
P G++ P ++ GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>01_05_0382 -
21661973-21662124,21662367-21662659,21662994-21663178,
21663268-21664023,21664118-21664390
Length = 552
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 283 LNALEVQNRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSG--SPIRIPVGAET 456
+NA E + +V++ +H G+ + + L+RG+ VL + RIP+
Sbjct: 358 INAYEEEGDEAAVVVDCCEHYGDPAIIETLVLSRLRLLRGKDVLPNARVGRFRIPLDGSP 417
Query: 457 LGRIINVIGEPXXXRG 504
G + + RG
Sbjct: 418 FGELETALDPEEHGRG 433
>11_02_0015 - 7355989-7357092
Length = 367
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 398 RTKPXVPXMAMVRTVXSPKCWATSSTRRGD 309
RTKP P ++R WAT +TRR D
Sbjct: 14 RTKPKPPMSRLMRLSLKAVDWATDATRRAD 43
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = -1
Query: 422 PESSTGCPRTKPXVPXMAMVRTVXSPKCWATSSTRRGDRFCTSRAFRIGGRLSSNCHL 249
P ++ G PR P P + PKC R G FCT F+ + H+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEA-ECPKCAQLKLLREGAAFCTQDCFKEAWSSHKSVHI 924
>07_01_0661 + 4968089-4969741
Length = 550
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 415 RVQVAHGLSLXYRPWQWSELXSPPNVGLPQVRGGE--IDFAPQG-HLESEAGYLRIAIYH 245
R +AH L +R Q + PP+V LP V + P+G L + A L +A H
Sbjct: 39 RADLAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSH 98
Query: 244 STDNGNNLTLAFSC 203
+ + L L SC
Sbjct: 99 TVVANSLLHLYSSC 112
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 261 RR*PASDSKCP*G--AKSISPPRT*GSPTFGGXHS-SDHCHGRYXRLSPWA 404
RR PA + P G A S++PP SP+ + CHG + SPWA
Sbjct: 47 RRPPAPATGPPQGTPAMSLAPPPPKASPSAARLQKPAASCHGGQPKASPWA 97
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 261 RR*PASDSKCP*G--AKSISPPRT*GSPTFGGXHS-SDHCHGRYXRLSPWA 404
RR PA + P G A S++PP SP+ + CHG + SPWA
Sbjct: 47 RRPPAPATGPPQGTPAMSLAPPPPKASPSAARLQKPAASCHGGQPKASPWA 97
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = -3
Query: 282 NRRQVIFELPSTTAPITATTL--PWPFPADXXXXXXXXXXXXXTIFPHSERDFSATDLTA 109
+R +V L + P TA+ P P PAD +F + F++ A
Sbjct: 63 SRHRVATNLSHSLTPATASAAAAPAPAPADEDSENRLIAFHLQRLFAGEDPSFASPPQIA 122
Query: 108 KMPLPTRLIAPNI 70
P P LI P I
Sbjct: 123 PQPQPQTLITPAI 135
>06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808
Length = 260
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 346 PNVGLPQVRGGEIDFAPQGHLE-SEAGYLRIA 254
PN+GL GG +F P+ H E SEA +LR+A
Sbjct: 115 PNLGLSDDYGGWCNF-PKEHFEMSEAAFLRVA 145
>04_03_0881 + 20528257-20528760,20528837-20529283
Length = 316
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 333 SPTFGGXHSSDHCHGRYXRLSPWATCTRLWXTHSYP 440
+PT SS HCHGR+ P A + W + +P
Sbjct: 23 TPTSPSSSSSPHCHGRHQLCYPPAPSSWPWPSCRHP 58
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + +G ++ PV + LGRI N G+P P P
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 523 LLAI 534
L I
Sbjct: 164 YLDI 167
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + +G ++ PV + LGR+ N G+P P P
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 523 LLAI 534
L I
Sbjct: 124 YLDI 127
>11_01_0460 + 3561490-3564104,3564162-3564558
Length = 1003
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 295 QGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIVPLV-XGIDCNDFS 149
+GH+ S G L + + GN L+ F F + L+ ID N+FS
Sbjct: 335 EGHVPSSLGNLSVQLQQFLLGGNQLSGVFPSGFQYLRNLISISIDSNNFS 384
>10_08_0742 + 20244984-20247008
Length = 674
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 412 LDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHA 540
L+S PI+ V + +I+NV P PT P R L HA
Sbjct: 192 LESAQPIQAWVDYDGSAKILNVTIAPVASTVPTRPRRPLISHA 234
>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
Length = 246
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 349 PPNVGLPQVRGGEIDFAPQGHLE-SEAGYLRIAIYHS 242
PPN GLP GG + P+ H + +E +L IA Y +
Sbjct: 102 PPNYGLPSDDGGWCN-PPRPHFDMAEPAFLHIAQYRA 137
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 460 RGFQLPPGYEWVXQSRVQVAHGLSLXYRPWQWSELXSPPNVGLP 329
RG++L Y+WV R QV + + ++ + PNVG P
Sbjct: 174 RGWRLSQSYQWVKDRRPQVQLTDASQNQLVEYEQKLFGPNVGAP 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,651
Number of Sequences: 37544
Number of extensions: 318074
Number of successful extensions: 855
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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