Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0216
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               151   4e-37
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            28   5.8  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  151 bits (366), Expect = 4e-37
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +1

Query: 256 QFEDNLPPILNALEVQNRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGSPIR 435
           QF+++LPPILNALEV+NR+PRL+LEVAQHLGE TVRTIAM GT GL+RGQ  +D+G PI 
Sbjct: 87  QFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPIT 146

Query: 436 IPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAEAP 549
           IPVG ETLGRIINVIGEP   RGP    +  AIHAEAP
Sbjct: 147 IPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAP 184


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 367 IAMXGTXGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
           + + G   L++ G  V  +G+ + +PVG E LGR+++ +G P   +GPT  TR
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR 64


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 452 SAPTGIRMGXPESSTG 405
           SAPTGI  G P SSTG
Sbjct: 124 SAPTGISFGQPTSSTG 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,190
Number of Sequences: 59808
Number of extensions: 327058
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)