Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0216
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   146   9e-36
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    40   0.002
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    40   0.002
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    30   0.96 
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    29   2.9  
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    29   2.9  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    27   6.8  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    27   6.8  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    27   6.8  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     27   6.8  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   9.0  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  146 bits (354), Expect = 9e-36
 Identities = 69/98 (70%), Positives = 77/98 (78%)
 Frame = +1

Query: 256 QFEDNLPPILNALEVQNRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGSPIR 435
           QF++NLPPILN LEV  RSPRL+LEV+QHLG+  VR IAM GT GLVRGQPV D+G PI+
Sbjct: 83  QFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIK 142

Query: 436 IPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAEAP 549
           IPVG ETLGRI+NVIGEP   RGP       AIHAEAP
Sbjct: 143 IPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAP 180



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 107 LAVKSVAEKSLSECGKIVAVNAVNKRDYAAKSAGKGQGKVVAVIGAVVD 253
           L+  +V  K     G      A   +  A  +A    G++VAVIGAVVD
Sbjct: 33  LSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVD 81


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 367 IAMXGTXGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAE 543
           + + G   ++R G  V  +G+ + +PVG   LGR+++ +G P   +GP    R   +  +
Sbjct: 74  VVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVK 133

Query: 544 AP 549
           AP
Sbjct: 134 AP 135


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 367 IAMXGTXGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAE 543
           + + G   ++R G  V  +G+ + +PVG   LGR+++ +G P   +GP    R   +  +
Sbjct: 101 VVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVK 160

Query: 544 AP 549
           AP
Sbjct: 161 AP 162


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 382 TXGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEP 489
           T G+  G PVL +G P+ + +G   +G I + I  P
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRP 94


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 379 GTXGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPXXXRGP 507
           GT G+     + + +G  +R PV  + LGRI N  G+P   +GP
Sbjct: 83  GTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKP-IDKGP 125


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 418 SGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAE 543
           +G   R PV  + LGRI N  G+P     P  P   L I+ +
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQ 150


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 334  LPQVRGGEIDFAPQGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIVP 182
            +P+V G +   + QG ++       +  Y+ +DNG         RF +I P
Sbjct: 1276 MPRVTGRQATSSAQGPVQLNEETSTVTTYYQSDNGRRQRSGSEGRFDNIPP 1326


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 334  LPQVRGGEIDFAPQGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIVP 182
            +P+V G +   + QG ++       +  Y+ +DNG         RF +I P
Sbjct: 1276 MPRVTGRQATSSAQGPVQLNEETSTVTTYYQSDNGRRQRSGSEGRFDNIPP 1326


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
            protein.
          Length = 1347

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 334  LPQVRGGEIDFAPQGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIVP 182
            +P+V G +   + QG ++       +  Y+ +DNG         RF +I P
Sbjct: 1153 MPRVTGRQATSSAQGPVQLNEETSTVTTYYQSDNGRRQRSGSEGRFDNIPP 1203


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 334  LPQVRGGEIDFAPQGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIVP 182
            +P+V G +   + QG ++       +  Y+ +DNG         RF +I P
Sbjct: 1276 MPRVTGRQATSSAQGPVQLNEETSTVTTYYQSDNGRRQRSGSEGRFDNIPP 1326


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 334  LPQVRGGEIDFAPQGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIVP 182
            +P+V G +   + QG ++       +  Y+ +DNG         RF +I P
Sbjct: 1276 MPRVTGRQATSSAQGPVQLNEETSTVTTYYQSDNGRRQRSGSEGRFDNIPP 1326


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 261 ELPSTTAPITATTLPWP 211
           + PST AP+T +T+P P
Sbjct: 193 DCPSTVAPVTCSTMPMP 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,872,045
Number of Sequences: 27780
Number of extensions: 243939
Number of successful extensions: 613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)