Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0216
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 71  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 169
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 71  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 169
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 145 MWKNRCSQCRXQE 183
           +W   CSQC  QE
Sbjct: 356 LWSGFCSQCIWQE 368


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = +3

Query: 396 PWATCTRLWXT 428
           PW +C   W T
Sbjct: 97  PWGSCNNYWNT 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,063
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)