Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0216
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 118 3e-27
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 118 3e-27
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 118 3e-27
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 36 0.014
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 29 2.7
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 29 2.7
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 28 3.6
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 28 3.6
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 28 3.6
At4g02410.1 68417.m00326 lectin protein kinase family protein co... 27 6.3
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 27 8.3
At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1) ide... 27 8.3
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 118 bits (283), Expect = 3e-27
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Frame = +1
Query: 256 QFEDN--LPPILNALEVQNRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGSP 429
+FED LPPI+ +LEVQ+ RLVLEV+ HLG+ VRTIAM GT GLVRG+ VL++G+P
Sbjct: 97 RFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAP 156
Query: 430 IRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAEAP 549
I +PVG TLGRI+NV+GEP RG L IH +AP
Sbjct: 157 ITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 196
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 118 bits (283), Expect = 3e-27
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Frame = +1
Query: 256 QFEDN--LPPILNALEVQNRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGSP 429
+FED LPPI+ +LEVQ+ RLVLEV+ HLG+ VRTIAM GT GLVRG+ VL++G+P
Sbjct: 100 RFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAP 159
Query: 430 IRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAEAP 549
I +PVG TLGRI+NV+GEP RG L IH +AP
Sbjct: 160 ITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 199
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 118 bits (283), Expect = 3e-27
Identities = 58/100 (58%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Frame = +1
Query: 256 QFEDN--LPPILNALEVQNRSPRLVLEVAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGSP 429
+FED LPPI+ +LEVQ+ RLVLEV+ HLG+ VRTIAM GT GLVRG+ VL++G+P
Sbjct: 97 RFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAP 156
Query: 430 IRIPVGAETLGRIINVIGEPXXXRGPTPPTRLLAIHAEAP 549
I +PVG TLGRI+NV+GEP RG L IH +AP
Sbjct: 157 ITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 196
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 331 VAQHLGEXTVRTIAMXGTXGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPT 510
+A +L V + G + G V +GS + +P G LGR+++ +G P +G
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 511 PPTRLLAIHAEAP 549
+ +AP
Sbjct: 394 SDHEQRRVEVKAP 406
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + +G ++ PV + LGRI N G+P P P
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 523 LLAI 534
L I
Sbjct: 123 YLDI 126
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + +G ++ PV + LGRI N G+P P P
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 523 LLAI 534
L I
Sbjct: 123 YLDI 126
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + V +G ++ PV + LGRI N G+P P P
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 523 LLAI 534
L I
Sbjct: 122 YLDI 125
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + V +G ++ PV + LGRI N G+P P P
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 523 LLAI 534
L I
Sbjct: 122 YLDI 125
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 346 GEXTVRTIAMXGTXGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPXXXRGPTPPTR 522
GE V + GT G+ + V +G ++ PV + LGRI N G+P P P
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 523 LLAI 534
L I
Sbjct: 122 YLDI 125
>At4g02410.1 68417.m00326 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain,
PF00139: Legume lectins beta domain and PF00138: Legume
lectins alpha domain
Length = 674
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 337 GLPQVRGGEIDF--APQGHLESEAGYLRIAIYHSTDNGNNLTLAFSCRFSSIV 185
G+P + G + F AP L S + ++ ST+NGN+ + F +I+
Sbjct: 98 GIPTISGHGMAFFIAPNPVLSSAMASQYLGLFSSTNNGNDTNHILAVEFDTIM 150
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 265 DNLPPILNALEVQNRSPRLVLEVAQHLGEXTVRTIAM 375
+NLP + + + R +LE A GE T RT A+
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAV 65
>At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1)
identical to 2-isopropylmalate synthase (IMS1)
[Arabidopsis thaliana] GI:12330687; identical to cDNA
2-isopropylmalate synthase (IMS1) GI:12330686
Length = 631
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -1
Query: 389 PXVPXMAMVRTVXSPKCWATSSTRRGDRFCTSRAFRIGGRLSSNCHLPQHR*RQQP 222
P +P ++ T S R T+ FR+ LS++ LP H R++P
Sbjct: 19 PSIPALSSSSTSPFSSLHLRSQNHRTISLTTAGKFRVSYSLSASSPLPPHAPRRRP 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,620
Number of Sequences: 28952
Number of extensions: 232929
Number of successful extensions: 562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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