Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0213
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   5.0  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   6.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.6  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   8.7  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 253 TFAGFKXILDPLNPDTXRA 309
           TF GF  I+DP+ PD   A
Sbjct: 774 TFLGFFGIMDPIRPDVPLA 792


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 152 NHYRLIXNGEVERYAPDQRYVVTLVGSRTHDVVQRL 259
           NHY  I +     Y       +TLV + T++V+ RL
Sbjct: 524 NHYEKILSRSHSNYLAQISINMTLVSNETNEVLSRL 559


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 86   CPRHWPVELNPGPGVGSKSPGDNHYRLIXNGEVER 190
            CP HW VE     G G  +  D  +  +   ++++
Sbjct: 974  CPEHWHVEAGKVTGKGKTAVDDGKFEDLSEKDLKK 1008


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 176 RXQSACSDCLQVTLNLLQDLDLARQASAADTRPSHTKILRLP 51
           R   +      + +N L +LDL   +   D+RPS  ++   P
Sbjct: 51  RDNDSDDSTFDINVNQLNELDLNDSSDQLDSRPSLRRVSSAP 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,198
Number of Sequences: 5004
Number of extensions: 29266
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)