Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0213
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    29   2.0  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    27   6.0  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    27   6.0  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    27   6.0  
AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    27   7.9  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
 Frame = +2

Query: 110 LNPGPGVGSKSPGDNHYRLIXNGEVER-------YAPDQRYVVTLVGSRTHDVVQRLRAS 268
           + P    G KSPG N Y +  NG   +       + P + Y V++ G RT   V+  R  
Sbjct: 29  IKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVPGEIYKVSIRGWRTQYTVKTFRGF 88

Query: 269 KXSLIL*TRTXGG 307
             S +    T  G
Sbjct: 89  VVSSLFEDNTSAG 101


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 254 VVLRHECGNRPESRHISDPAHIAQLLRXQSACSD 153
           + L HECG R +S H++  AH    LR     +D
Sbjct: 450 IYLLHECGQRVDSVHVAVLAHKLGYLRMSKKSTD 483


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 200 PAHIAQLLRXQSACSDCLQVTLNLLQDLDLARQASAAD 87
           PAH +QL+   S C D L +   L  D D+   + A D
Sbjct: 613 PAHFSQLIIEASNCLDPLLIMDKLPDDSDIPNLSEALD 650


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 200 PAHIAQLLRXQSACSDCLQVTLNLLQDLDLARQASAAD 87
           PAH +QL+   S C D L +   L  D D+   + A D
Sbjct: 613 PAHFSQLIIEASNCLDPLLIMDKLPDDSDIPNLSEALD 650


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 200 PAHIAQLLRXQSACSDCLQVTLNLLQDLDLARQASAAD 87
           PAH +QL+   S C D L +   L  D D+   + A D
Sbjct: 661 PAHFSQLIIEASNCLDPLLIMDKLPDDSDIPNLSEALD 698


>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 280 DPLNPDTXRAPSKQGXFQLXIXTXTXFDEEXTNSVVEADDL 402
           DP+ P   RAP++ G F   I +        ++SVVE+ DL
Sbjct: 318 DPMPP---RAPAQHGMFAFKIPSAANTSTVHSSSVVESGDL 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,880,654
Number of Sequences: 27780
Number of extensions: 181698
Number of successful extensions: 330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)