Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0213
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con...    30   0.79 
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p...    29   1.4  
At3g14240.1 68416.m01803 subtilase family protein contains simil...    29   2.4  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    27   7.3  
At4g03740.1 68417.m00513 hypothetical protein                          27   7.3  
At4g01920.1 68417.m00255 DC1 domain-containing protein similar t...    27   7.3  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   9.7  

>At2g17010.1 68415.m01961 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 779

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 46  KMGNLRILVWLGLVS--AALACRAKSRSWSRFKVTWRQSL 159
           K+  + +L WL LV+  AALAC    +SW + +V W   L
Sbjct: 295 KLDAITLLQWLSLVAIIAALACSLSIQSWKKVRV-WNLHL 333


>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 462

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 98  WPVELNPGPGVGSKSPGDNHYRLIXNGEVE 187
           WP+E N G  V SKSP +   ++  +G+ E
Sbjct: 339 WPLEDNAGESVSSKSPKNGKQKMESDGDSE 368


>At3g14240.1 68416.m01803 subtilase family protein contains
           similarity to SBT1 GI:1771160 from [Lycopersicon
           esculentum]
          Length = 775

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 290 FKGSRIXLKPANVVLRHEC-GNRPESRHISDPAHIAQLLRXQSACSD 153
           FKG+R+ ++PA VV      G  PE+  I  P  IA  L   +A  D
Sbjct: 480 FKGTRLGIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPD 526


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  NKMGNLRILVWLGLVSAALACRAKSRSWSRFKVTWRQSL 159
           NK+ +LR L+   + SA+ A   +    S+F V WR  +
Sbjct: 2   NKIRSLRCLLPETITSASTAASNRGSDGSQFSVLWRHQI 40


>At4g03740.1 68417.m00513 hypothetical protein 
          Length = 345

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 248 LRHECGNRPESRHISDPAHIAQLLRXQSACSDCL 147
           L  + G+R  S+ + +P H+A L R  S   DCL
Sbjct: 99  LERKVGSRRVSKRL-EPRHMASLQRVLSVAGDCL 131


>At4g01920.1 68417.m00255 DC1 domain-containing protein similar to
           A. thaliana CHP-rich proteins
          Length = 658

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -3

Query: 266 KPANVVLRHECGNRPES--RHISDPAHIAQLLRXQSACSDC 150
           K  +  +R  C + P    +H S P H  QLLR +   + C
Sbjct: 44  KTCDFFVRKNCADEPSEYIKHPSHPKHTLQLLRPERPTNFC 84


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 167 SACSDCLQVTLNLLQDLDLARQASAADTRPSHTKILRLPILF 42
           + CS   Q+  ++  DLDL  ++S+A +  S   I  L +LF
Sbjct: 16  TVCSTAHQINAHISCDLDLNSRSSSASSSTSSPTIGGLSLLF 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,486,125
Number of Sequences: 28952
Number of extensions: 174196
Number of successful extensions: 395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)