Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0212
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   103   2e-23
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   4.2  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    25   9.7  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  103 bits (247), Expect = 2e-23
 Identities = 50/72 (69%), Positives = 59/72 (81%)
 Frame = +2

Query: 38  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSDITRAPEMLGGRVK 217
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 218 TLHPAVHAGILA 253
           TLHPAVH GILA
Sbjct: 63  TLHPAVHGGILA 74



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +1

Query: 271 QXDMKRQKYEMISVVVCXLXPFVXXVSKPDVTVADAVENIDIGGVTXLRA 420
           + D+  Q  E I +VVC L PF   ++KP+VT+ +AVE IDIGGVT LRA
Sbjct: 81  EKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130



 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 423 AKXHDRVTVVCDPADY 470
           AK H RVT++ DPADY
Sbjct: 132 AKNHARVTILSDPADY 147


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 13  EHGVKWKTSSSQRFGQNGS 69
           +HG++W T   Q FG+  S
Sbjct: 647 DHGIRWVTLGEQNFGEGSS 665


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 139  ASERRPDSSRCVGHHESTGDAR--GSGENFTSSGTRW 243
            A  +RP S R  G   + GD+R  G G N   S + W
Sbjct: 1273 AESQRPSSGRMHGRDMNRGDSRMGGRGSNPPFSSSDW 1309


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 438 RVTVVCDPADYDAVVKXIKENKXHRRL 518
           ++T + DPA+ ++V+  IKE    + +
Sbjct: 28  KITAIVDPAEPESVIPVIKEKTAKKEI 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,746
Number of Sequences: 5004
Number of extensions: 28127
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)