Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0212
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 85 5e-17
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 29 2.4
11_02_0149 - 8801675-8804332 29 3.2
08_01_0621 - 5426210-5427787 28 4.3
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 27 7.5
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862... 27 9.9
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 27 9.9
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 27 9.9
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 84.6 bits (200), Expect = 5e-17
Identities = 42/74 (56%), Positives = 50/74 (67%)
Frame = +2
Query: 32 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSDITRAPEMLGGR 211
K AL+S+SDKT L L L G +I++GGTA+ L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 212 VKTLHPAVHAGILA 253
VKTLHP+VH GILA
Sbjct: 106 VKTLHPSVHGGILA 119
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 310 VVVCXLXPFVXXVSKPDVTVADAVENIDIGGVTXLRA 420
VVV L PF V+ ++ D +ENIDIGG T +RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 88 SVGMWPAVDRQWRYRHGASERRPDSSRCVGHHESTGDARGSGENFTSSGTRW 243
SV PA+ RH R SSR GH + GD SG +G W
Sbjct: 721 SVHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGW 771
>11_02_0149 - 8801675-8804332
Length = 885
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 11 QNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 112
QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 555 QNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>08_01_0621 - 5426210-5427787
Length = 525
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 479 YSIVVGRVTDDGDPVVVLGXARRXVTPP 396
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 64 GSTLVSKESVGMW--PAVDRQWRYRHGASERRPDSSRC 171
G+ L SK+ VG++ PAVD +R+ +++ + ++C
Sbjct: 279 GTVLGSKDIVGIYRTPAVDNHKEFRYNLFKKQAEHTKC 316
>03_06_0446 -
33985668-33985940,33986008-33986085,33986151-33986233,
33986709-33986766,33987677-33987933,33988140-33988413
Length = 340
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -3
Query: 214 HPTPEHLRCSRDVRHILNCQAGVP 143
+P P H C D+R C+ +P
Sbjct: 314 YPVPAHQVCGEDLRQCRECEVAIP 337
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 122 GGTATXLRNAGLTVQDVSDITRAPEMLGGRVKT 220
GGTAT LR GL V +S + GGR +T
Sbjct: 370 GGTATELRRRGLCVAALSPAVVSLAAEGGRRRT 402
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -1
Query: 390 DVLDRVRHGHVRLRYRXDE-XVQXTDHH 310
DVL +R GHV L Y E DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,831,686
Number of Sequences: 37544
Number of extensions: 234396
Number of successful extensions: 714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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