Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0212
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 106 9e-24
AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical ... 33 0.14
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 6.7
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 6.7
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 27 6.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 8.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.9
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 106 bits (255), Expect = 9e-24
Identities = 51/79 (64%), Positives = 60/79 (75%)
Frame = +2
Query: 17 MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSDITRAPE 196
M LA++SVSDKTGL+ LA L GL LIASGGTA +R+ G+ V DV+D+T+ PE
Sbjct: 1 MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60
Query: 197 MLGGRVKTLHPAVHAGILA 253
MLGGRVKTLHPAVH GILA
Sbjct: 61 MLGGRVKTLHPAVHGGILA 79
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +1
Query: 277 DMKRQKYEMISVVVCXLXPFVXXVSKPDVTVADAVENIDIGGVTXLRA 420
D+++ +SVVVC L PF V D +V +AVENIDIGGVT LRA
Sbjct: 88 DLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135
Score = 40.3 bits (90), Expect = 9e-04
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 423 AKXHDRVTVVCDPADYDAVVKXIK 494
AK H+RV+V+CDPADYD ++ +K
Sbjct: 137 AKNHERVSVICDPADYDHIISELK 160
>AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical
protein C41H7.2 protein.
Length = 170
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 221 KFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGH 99
KF PR P S C T + SG +EAP +R ++TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1
Query: 204 PSISGALVMSDTS*TVRPAFRSXVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 25
PS S A S +RP ++ A P A H+D+LF E LRR +FPF
Sbjct: 6 PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57
Query: 24 D 22
+
Sbjct: 58 E 58
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 115 RQWRYRHGASERRPDSSRCVGHHESTGDARGSGENFTSSGTR 240
+++R RHG E P R HH G+ + EN + ++
Sbjct: 212 KKYRPRHGEEEEEPSRER--EHHHHRGEEKPETENIAETPSK 251
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 319 RPPRLSSRTSDVSCLPGQSL 260
RPPR S+T+D +CL +S+
Sbjct: 2448 RPPRSKSKTADANCLQIESM 2467
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 319 RPPRLSSRTSDVSCLPGQSL 260
RPPR S+T+D +CL +S+
Sbjct: 2448 RPPRSKSKTADANCLQIESM 2467
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 319 RPPRLSSRTSDVSCLPGQSL 260
RPPR S+T+D +CL +S+
Sbjct: 2448 RPPRSKSKTADANCLQIESM 2467
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,348
Number of Sequences: 27780
Number of extensions: 174511
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -