Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0212
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    89   2e-18
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    29   2.0  
At5g15110.1 68418.m01770 pectate lyase family protein similar to...    29   2.7  
At1g64410.1 68414.m07301 hypothetical protein                          28   4.7  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    28   4.7  
At2g04220.1 68415.m00407 hypothetical protein                          27   8.3  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +2

Query: 11  QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATXLRNAGLTVQDVSDITR 187
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T 
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 188 APEMLGGRVKTLHPAVHAGILA 253
            PEML GRVKTLHP +H GILA
Sbjct: 124 FPEMLDGRVKTLHPNIHGGILA 145



 Score = 35.5 bits (78), Expect = 0.024
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 310 VVVCXLXPFVXXVSKPD-VTVADAVENIDIGGVTXLRA 420
           VVV  L PF   V+ P  ++  D +ENIDIGG   +RA
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 155  LTVQDVSDITRAPEMLGGRVKTLHPAVHAGILAHYQTLTRXT*NVRST 298
            L+ Q++ ++ R+P+M     K +H      + AH Q +TR   NV  T
Sbjct: 1180 LSAQELGELIRSPKMGKPLHKFIHQFPKVTLSAHVQPITRTVLNVELT 1227


>At5g15110.1 68418.m01770 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 472

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 109 VDRQWRYRHGASERRPDSSRCVG--HHESTGDARG 207
           +D+ WR R   ++RR   +RCV    H +TG  RG
Sbjct: 124 IDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRG 158


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 426 KXHDRVTVVCDPADYDAVVKXIKENKXH 509
           K HDRVTV  +P D D   K   E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 426 KXHDRVTVVCDPADYDAVVKXIKENKXH 509
           K HDRVTV  +P D D   K   E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At2g04220.1 68415.m00407 hypothetical protein
          Length = 307

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +1

Query: 49  RFGQNGSTLVSKESVGM-WPAVDRQWRYR-----HGASERRPDSSRCVGHHESTGDARGS 210
           +F  N + LV K+ V + W   D  W +      HG    +P ++       S     G 
Sbjct: 216 KFRGNQTVLVDKQPVQVFWDVYD--WLFSMPGTGHGLFIFKPGTTEDSDMEGSGHGGGGG 273

Query: 211 GENFTSSGTRWY 246
           GE+ TS+G+R+Y
Sbjct: 274 GESDTSTGSRYY 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,669,009
Number of Sequences: 28952
Number of extensions: 165802
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)