Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0211
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    31   0.15 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   1.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   4.3  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   4.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.7  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    25   7.5  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   7.5  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   7.5  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -2

Query: 485 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKXXMLTPSWPATSMIVLTLLKXAFFCS 306
           ++ V   S ++A SH  CF   QN+  + +       +   +P T    + LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 305 LTGR 294
           L GR
Sbjct: 290 LFGR 293


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 250 NSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 158
           N++R+G L +G ++VC   GD +   LSC   G+
Sbjct: 891 NNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 558 PNASRPFLISRTRSPLRLDGEFPKEGRGRP 469
           P  ++P ++  T +  ++D   PK GRGRP
Sbjct: 316 PPLNKPKILFGTSTENKIDENRPKRGRGRP 345


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 77  NNLTGRDLEEFNRIHFGRRNNLEI 148
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 47  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 157
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -1

Query: 456 FGKLAPRLLLPCAEREGHVPQLL---ETXDVNTLLAGNIDDSLDFIENXFLLLVDWTIGG 286
           +GK AP+ L   A    H+P+++      D     + + +     I+    +L DW  G 
Sbjct: 442 YGKKAPKFLRVFARSSSHIPKMIRRKRQMDSKKYFSFDKESDRQVIDQ---VLSDWYSGK 498

Query: 285 HRDGMLNYSY 256
           H     ++SY
Sbjct: 499 HELVQQSHSY 508


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 80  NLTGRDLEEFNRIHFGRRNNLEIKLKESSI 169
           NL  + ++E NR+   R N+LEI+  +  I
Sbjct: 74  NLDDQGIDEENRVRLERMNDLEIEGAQEEI 103


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 274 NAELFLPHNSRRSGLLVLGRESVCGD 197
           NAEL LP+N   S  + L + S+C D
Sbjct: 175 NAELGLPNNKDSSNGVRLDKSSICID 200


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 290 VGTAMEC*TIPTSQFSAVGSARPWPGK 210
           VG A+     PTSQ  A   AR W G+
Sbjct: 334 VGLALHVVPFPTSQAQAAFLARVWSGR 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,974
Number of Sequences: 5004
Number of extensions: 38744
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)