Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0211
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 101 4e-22
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 33 0.20
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 31 0.47
09_04_0144 + 15071723-15071993,15072078-15072632,15072671-150726... 29 3.3
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119... 29 3.3
09_01_0143 - 2128623-2129230,2129626-2129876,2130148-2130254,213... 28 4.4
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 4.4
09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421... 28 5.8
06_03_0897 + 25762154-25763056,25764189-25764800 28 5.8
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 101 bits (242), Expect = 4e-22
Identities = 52/89 (58%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 VGIVQHSIAVPTDRPVNEQKKAIFNKVKTIIDVAGQEGVNIXCFQ-----ELWNMPFAFC 420
VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI C Q E W MPFAFC
Sbjct: 98 VGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTMPFAFC 157
Query: 421 TREKQPWCEFAESAEDGPTTTFLRELAIK 507
TREK+ WCEFAE DG +T FL++LA K
Sbjct: 158 TREKR-WCEFAEPV-DGESTQFLQQLAKK 184
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -1
Query: 399 PQLLETXDVNTLLAGNIDDSLDFIENXFLLLVDWTIGGHRDGMLNYSYLTILGGRVCSSL 220
P+L E VNTL + +SLD + L+ + G RD + L++LG R+ SL
Sbjct: 521 PKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSL 580
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 399 PQLLETXDVNTLLAGNIDDSLDFIENXFLLLVDWTIGGHRDGMLNYSYLTILGGRVCSSL 220
P+L E VNTL + + LD + L+ + G RD + L++LG R+ SL
Sbjct: 525 PKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSL 584
>09_04_0144 +
15071723-15071993,15072078-15072632,15072671-15072681,
15072954-15073012,15073962-15074040
Length = 324
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Frame = +1
Query: 415 FCTREKQPW-----C-EFAESAED--GPTTTFLRELAIKSQW*SCPRY 534
FC R + PW C EF + +D G ++LA K +W CP Y
Sbjct: 229 FCARCRVPWHDGIKCKEFRKLGDDEKGEEDLMFKKLAGKKKWQRCPNY 276
>02_01_0174 -
1193696-1193726,1193822-1194175,1194307-1194542,
1194629-1194741,1195963-1196161,1196427-1196513
Length = 339
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 216 RPRTSRPDRREL*GRNSSAFHRGAHRSS 299
R R PDRR+ GR++S + RG R S
Sbjct: 240 RGRDRSPDRRDYRGRSASPYGRGRERGS 267
>09_01_0143 -
2128623-2129230,2129626-2129876,2130148-2130254,
2130475-2130648,2132028-2132270,2133905-2134030
Length = 502
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 295 DRWAPRWNAELFLPHNSRRSGLLVLGRESVCGDVE 191
D+ AP+ EL PH++ SG V+ +++ GD E
Sbjct: 283 DQLAPQRFTELLPPHSASVSGTQVIKQDAASGDCE 317
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 443 HHGCFSLVQNAKGMFHNSWKXXMLTPSWP--ATSMIVLTLL 327
H C ++++ + G+ N W+ PS+P SMI+ L
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACL 689
>09_04_0142 +
15039745-15040538,15041094-15041218,15041842-15042137,
15042267-15042554,15042834-15043193
Length = 620
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = +1
Query: 415 FCTREKQPW-----CE-FAESAED--GPTTTFLRELAIKSQW*SCPR 531
FC R PW CE F E ED G +R LA + +W CP+
Sbjct: 202 FCARCMVPWHDGVGCEEFQELGEDERGREDVMVRRLAGRERWQRCPQ 248
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 393 VVEHALRVLHKGEAAVVRVCRIS*RRADHDLPSGTRHQVAMVIVSS-ILERDEKH 554
V++ LR+ G ++RVCR + + D+P GT MV+V+ + RD K+
Sbjct: 360 VIKETLRLHPPGPRLLLRVCRTTCQVLGFDVPKGT-----MVLVNMWAINRDPKY 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,179
Number of Sequences: 37544
Number of extensions: 285068
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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