Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0211
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         33   0.21 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2)              27   7.9  
SB_51114| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 555 NASRPFLISRTRSPLRLDGEFPKEGRGRPVFS*FGKLAPRLLLPC 421
           N+++ F  +  RS +R DGE  K GR    FS   KLA  +L  C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 156  KNPRSLQLRRLTSTSPHTLSRP-RTSRPDRREL*GRNSSAFHRGAHRSSSQRAKE 317
            K PR     R  S+SP   SRP RTS   RR    R  S   RG+ RS S   +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRS---RGSRRSPSPPKRE 1098


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 408 GHVPQLLETXDVNTLLAGNIDDSLDFIENXFLLLVDW 298
           G VP   +   +NTLL GN  DS  F  N   LL  W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759


>SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 32  AIMENETHSLESIINNNLTGRDLEEFNRIHFGRR 133
           ++MENET ++  I     +G +  E  R+ F RR
Sbjct: 291 SLMENETSTIRFIARKVKSGMENTELERLEFSRR 324


>SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2)
          Length = 640

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 186 LTSTSPHTLSRPRTSR-PDRREL*GRNSSAFHRGAHRSSSQRAKESXFQ*SQD 341
           L  +S   + +  + R PDR E  GR++ +  R  HRS  +R KE   +  +D
Sbjct: 358 LRESSSSRVGKESSKRSPDRDEKNGRSNGSPKREKHRSDRKRDKEESRERDRD 410


>SB_51114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 111 TEFILGGGITLKSN*KNPRSLQL-RRLTSTSPHTLSRPRTSRPDRREL*GRNSSAFHRGA 287
           TE+ L     ++   K    L++  R T+ SP T +RP TS   R+        A  R  
Sbjct: 172 TEYFLSDKEWVRKTRKEIERLKISERSTALSPRTPTRPHTSLEFRKSPPSPRVRAVSRLT 231

Query: 288 HRSSSQRAK 314
           +RS  Q  K
Sbjct: 232 NRSEPQHMK 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,889
Number of Sequences: 59808
Number of extensions: 311211
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)