Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0210
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    27   0.082
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.1  

>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 19  YQKLITAVTSLVQFLRTQLNEFGIINTTPDFANFFAAPSSIK 144
           +QKL     + ++ L  Q   FG++  TPD + F   PSS++
Sbjct: 4   FQKLYQKFVNSIRILLFQSRIFGLVTFTPDRSKF--RPSSLR 43


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 219 PGPSQSLQTS*HNPLDEVPSKLRAVVV 299
           PGP Q L    H PL+    K+   +V
Sbjct: 252 PGPKQELPDLNHKPLNLTIKKMPIAIV 278


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 219 PGPSQSLQTS*HNPLDEVPSKLRAVVV 299
           PGP Q L    H PL+    K+   +V
Sbjct: 144 PGPKQELPDLNHKPLNLTIKKMPIAIV 170


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 412 FKTENPRLLFWKIR 453
           +K ENP +  W+IR
Sbjct: 124 YKRENPSIFSWEIR 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,283
Number of Sequences: 336
Number of extensions: 2349
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)