Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0210
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   5.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   5.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   5.6  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   7.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   9.7  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 505 SSVQNSLSIFFQFDDTPLLSSKIRAL 428
           +S QNS+  FF   D+PL  S ++AL
Sbjct: 862 ASSQNSIISFFLSPDSPLYFSTLKAL 887


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 46  SLVQFLRTQLNEFGIINTTPDF----ANFFAAPSSIKSAPSLAGEATWSFFKQL 195
           SLV++LR +L +  + + +PDF      F    S+     S   +  WSF + +
Sbjct: 582 SLVRYLRFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 16  VYQKLITAVTSLVQFLRTQLNEFGIINTTPD 108
           +Y+    ++TSL+Q   +QL+++ +I   PD
Sbjct: 222 IYEIFKYSITSLLQIPVSQLSQYSVIFIVPD 252


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 185 SSSCTPVISLTSWPFSEPTD 244
           S +C+P +  T WP ++P+D
Sbjct: 210 SYACSPGMLKTQWPSTQPSD 229


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 310 TSSRSTVATSPSQETVATYWRTTTSIETS 396
           TSS ST+++S S  + +++  TT+S ++S
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSS 365


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 345 PGNCRYVLAHDHVDRNFTLLIQLQ-NGKP 428
           P + RY+L H+HV++ + +L ++    KP
Sbjct: 261 PESPRYLLRHNHVEKVYKILSRIHPEAKP 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,646
Number of Sequences: 5004
Number of extensions: 43455
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)