Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0210
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 38 0.004
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 30 1.4
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 29 3.2
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 5.6
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 5.6
12_01_0718 + 6339982-6342981 27 9.9
11_04_0434 + 17706314-17706328,17706439-17706508,17706696-177067... 27 9.9
10_08_1046 + 22542074-22544749,22544837-22545544 27 9.9
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 27 9.9
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 27 9.9
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 27 9.9
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -1
Query: 219 DVREITGVQLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFIQLSP 64
DV ++GV L EE + LS+ + +W+SEE RK+ + D F+Q P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 311 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 421
H H +PPHL R+ + A P R LH PT R
Sbjct: 20 HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 124 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 228
A PSS+ S+ ++AG+ TW+ + +++ IL L
Sbjct: 32 APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 187 KQLYSGDFPDILALLRAYRPRSITH 261
K+L +GDF L LL+ Y P +I+H
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISH 266
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 300 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 389
NGQH+ +D R F G RY H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330
>12_01_0718 + 6339982-6342981
Length = 999
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 258 GYATRSVGSEKGQDVREITGVQLLEEAPRCLSS 160
G S+G K D+ E++G+QLL P +S+
Sbjct: 361 GVLPSSIGKLKSLDLLEVSGLQLLGSIPSWISN 393
>11_04_0434 +
17706314-17706328,17706439-17706508,17706696-17706798,
17706894-17707086
Length = 126
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 252 HNPLDEVPSKLRAVVVNGQHIFT 320
HNPLD VP+ R NG+H FT
Sbjct: 21 HNPLDIVPT--RQEKKNGKHFFT 41
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 105 GRRVDNAKFIQLSPQELDERCNSCD 31
GRR D+ +FI S +LD +S D
Sbjct: 27 GRRTDSGRFISYSRDDLDSEISSVD 51
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 514 ILGSSVQNSLSIFFQFDDTPLLSSKIRALGFPF*SWISSVK 392
++G V+N L + ++F D LS ++ G+ SW + V+
Sbjct: 360 LIGYCVENCLFLVYEFIDNGNLSQHLQRTGYAPLSWATRVQ 400
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.1 bits (57), Expect = 9.9
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Frame = +2
Query: 179 ASSSSCTPVISLTSWPFSEPTDLVA*PTRRSAV*APRCCCERSTHLHVRRSPPHLPRKLS 358
A+ S P + T+ P + PT S AP TH R SPP LP +
Sbjct: 99 AAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPT-PTPTHTQPRPSPPLLPTPAT 157
Query: 359 LRIGARPRR*KLHAAN----PTSKRKTQGS 436
A P + + ++N P + R+T S
Sbjct: 158 AADPANPNKARHPSSNKSSSPAAPRRTNSS 187
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -3
Query: 463 DTPLLSSKIRALGFPF*SWISSVKFLSTWSCANT*RQFPGKVRWRPSNVKMC*PFTTTAR 284
DTP S LG P ++ + + S N R FPG++ + + + PFT A
Sbjct: 414 DTPASPSCGACLGGPRDTYARMNEPMVCVSTTN--RNFPGRMGHKEGQIYLASPFTAAAS 471
Query: 283 SLDG 272
+L G
Sbjct: 472 ALTG 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,302
Number of Sequences: 37544
Number of extensions: 298523
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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