Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0210
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 40 0.001
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 38 0.007
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.62
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 30 1.1
SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08) 29 1.9
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 306 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGK 425
+H TFDGRH+ F G C Y LA D + + + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 309 HIFTFDGRHLTFPGNCRYVL 368
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 273 PSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLIQ 410
P A++ H+ TFD + FPG C YVLA D D FT++ Q
Sbjct: 1639 PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMSQ 1688
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +3
Query: 267 EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HDH----VDRNFTLLIQLQNGKPK 431
+ P +V H TFD R + G C YVL+ H H + FT+ I++ + +
Sbjct: 843 DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSR 902
Query: 432 ALIL 443
LI+
Sbjct: 903 QLIV 906
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 0.62
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 309 HIFTFDGRHLTFPGNCRYVLAHD 377
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 314 LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 409
L VR+ PP L RKL+ R+ P+R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 543
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 GELRVVYQKLITAVTSLVQFLRTQLNEFGII-NTTPDF 111
G RV+Y+ + T+V SL++ LRT GI+ N P+F
Sbjct: 122 GSFRVLYRSIHTSVESLIE-LRTAYRSSGILSNCVPNF 158
>SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -2
Query: 545 KANTSFSMIGNPWKLRSE*PVHFLSIR*YSALIFQNKSLGFSVLKLD*QREVSIDVVVRQ 366
KA + ++ + W S+ + I+ Y L+ G K++ + + +DV ++
Sbjct: 472 KARSVYTRLKRIWN--SKKIMRRTKIKLYKPLVLSVLLYGCETWKMNKKDDKLLDVFQQK 529
Query: 365 Y---VATVSWEGEVATVEREDVLTVHNNSAELRR 273
Y + +SWE V E + VH S+E++R
Sbjct: 530 YLRRILKISWEDHVTNEEVQRRTGVHQLSSEMKR 563
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 29.5 bits (63), Expect = 1.9
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Frame = +1
Query: 175 WSFFKQLYSGDFPDILALLRAYRPRSITH*TKCRLSSALLL*TVNTSSRSTVATSPSQET 354
W+ +KQL DF D LALL + + +SA L +N T+ S ET
Sbjct: 793 WTLWKQLDDLDFADDLALLSHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNET 852
Query: 355 -VATYWRTTTSIETSRC*SNF------KTENPRLLFWKIRAEYHRIERKWTGYSERS 504
+ ++T + K + R K RA +H+I+ W G SE S
Sbjct: 853 PITVQGEALEEVDTFTYLGSILDNQGGKDADIRTRIGKARAAFHQIKNIW-GSSEIS 908
>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
Length = 421
Score = 29.5 bits (63), Expect = 1.9
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Frame = +1
Query: 175 WSFFKQLYSGDFPDILALLRAYRPRSITH*TKCRLSSALLL*TVNTSSRSTVATSPSQET 354
W+ +KQL DF D LALL + + +SA L +N T+ S ET
Sbjct: 149 WTLWKQLDDLDFADDLALLSHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNET 208
Query: 355 -VATYWRTTTSIETSRC*SNF------KTENPRLLFWKIRAEYHRIERKWTGYSERS 504
+ ++T + K + R K RA +H+I+ W G SE S
Sbjct: 209 PITVQGEALEEVDTFTYLGSILDNQGGKDADIRTRIGKARAAFHQIKNIW-GSSEIS 264
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 271 CRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSR 399
CR ++ T NTSS S V+T+ S TVA RT TS ++R
Sbjct: 135 CRDATVYRFVTYNTSSSSNVSTTRSPVTVA---RTITSQSSNR 174
>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 376 TTSIETSRC*SNFKTENPRLLFWKIRA-EYHR 468
T S S C N+ ENP L+ W++ A +YHR
Sbjct: 913 TDSEYFSYCIRNYIHENPDLILWELAANDYHR 944
>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 291 VVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGKPKALILEDK 452
+ ++ HIF DG H FP + V AH + T I+L L+LE +
Sbjct: 252 IAIHFSHIFAGDGFHFVFP-SLLQVYAHHQGNDMVTRAIELFASVAPILLLETR 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,592,684
Number of Sequences: 59808
Number of extensions: 334972
Number of successful extensions: 976
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -