Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0210
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 255 NPLDEVPSKLRAVVVNG---QHIFTFDGRHLTFPGNCRYV 365
           +PLD  P K+ + ++N    ++  TFDG    F  NCR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 325  SNVKMC*PFTTTARSLDGTSSSGLCYEVCRL*EGPGCQG 209
            SN   C   +TT + LDG+ + G C   C    G GC G
Sbjct: 990  SNGLCCAGTSTTVKCLDGSDAVGACIPSC---TGDGCGG 1025


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 325 SNVKMC*PFTTTARSLDGTSSSGLCYEVCRL*EGPGCQG 209
           SN   C   +TT + LDG+ + G C   C    G GC G
Sbjct: 332 SNGLCCAGTSTTVKCLDGSDAVGACIPSC---TGDGCGG 367


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 325 SNVKMC*PFTTTARSLDGTSSSGLCYEVCRL*EGPGCQG 209
           SN   C   +TT + LDG+ + G C   C    G GC G
Sbjct: 332 SNGLCCAGTSTTVKCLDGSDAVGACIPSC---TGDGCGG 367


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 265 TKCRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSRC*SNFKTENP 429
           T    S+  L+ T ++S+ +T  T+P   T  T   TTT+  TS   S   T  P
Sbjct: 449 TSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPTTTTYTTSTSTSTTTTLPP 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,400
Number of Sequences: 27780
Number of extensions: 248027
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)