Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0210
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 303 RSQQQRGA*TALRLVGYATRSVGSEKGQDV 214
           RSQ +    T++    Y+TR++  EKGQ +
Sbjct: 289 RSQLEYDLQTSIMSRHYSTRAIVIEKGQSI 318


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 91   INTTPDFANFFAAPSSIKSA 150
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 225 GQDVREITGVQLLEEAPRCLSS 160
           GQ+V     V LLE A RCL +
Sbjct: 144 GQEVIYTACVGLLERAFRCLGN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,730
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)