Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0210
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    30   1.2  
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2...    28   3.6  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   4.7  
At3g13670.1 68416.m01722 protein kinase family protein contains ...    27   6.2  

>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 437 KSLGFSVLKLD*QREV---SIDVVVRQYVATVSWEGEVATVEREDVLTVHN 294
           KSL F  LK    REV   S+ +V+  +   VSWEGE A  + +D    H+
Sbjct: 334 KSL-FKDLKFFLSREVPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383


>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
           (GLR3) plant glutamate receptor family, PMID:11379626
          Length = 909

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -2

Query: 143 LIELGAAKKFAKSGVVLIMPNSFS*VLKNWTSDVTAVIN 27
           L+EL A++ FAK+  + +M   +  +L N  +DV +++N
Sbjct: 229 LVELLASRFFAKATEIGLMKQGYVWILTNTITDVLSIMN 267


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 91  INTTPDFANFFAAPSSIKSAPSLAGEATWSFFKQL---YSGDFPDILA 225
           ++ +P+  + F   S  ++AP L   A W F K+    +  ++P+ +A
Sbjct: 465 LDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVA 512


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 300 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 389
           +GQH+  +D R   F G  RY  AH H+ R
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGR 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,002
Number of Sequences: 28952
Number of extensions: 237422
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)