Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0209
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 2e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 4e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 1e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 94 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 66 4e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 4e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 4e-04
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.35
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.3
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 4.3
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 10.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (436), Expect = 2e-46
Identities = 85/101 (84%), Positives = 87/101 (86%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
AQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAP EHP LLTEAPLNPK+NRE
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNRE 117
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KMTQI+FETFN PA VAIQAVLSL S T VLD GDG
Sbjct: 118 KMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDG 158
Score = 119 bits (287), Expect = 3e-28
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDE ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (244), Expect = 4e-23
Identities = 45/101 (44%), Positives = 71/101 (70%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
A++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANRE
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANRE 117
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KM + MFE + + VAIQAVLSL + + V+D GDG
Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDG 158
Score = 52.4 bits (120), Expect = 4e-08
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEHRA 264
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDE A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 100 bits (240), Expect = 1e-22
Identities = 47/102 (46%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPXEHPVLLTEAPLNPKANR 431
AQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L P EHP+LLTE PL N+
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNK 121
Query: 432 EKMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
EK+ + +ET N PA+ ++Q VL+L S T VL+ GDG
Sbjct: 122 EKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDG 163
Score = 65.7 bits (153), Expect = 4e-12
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG E
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSE 61
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 94.3 bits (224), Expect = 1e-20
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = +3
Query: 279 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANREKMTQIMFE 458
+L YPI HG + NWD ME+ W + + LR P +H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 459 TFNTPAMXVAIQAVLSLTRS 518
+FN + +A+QAVL+L S
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 255
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 65.7 bits (153), Expect = 4e-12
Identities = 37/117 (31%), Positives = 52/117 (44%)
Frame = +3
Query: 201 PSGCDGRHGTERLVRRRRAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPX 380
PS C RL + +K I +G V NWD +W + +L+ P
Sbjct: 38 PSYCGEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPL 97
Query: 381 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFG 551
EHP+L+TE NP NR K + MFE+ PA +A Q + S T ++D G
Sbjct: 98 EHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 192
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 2e-11
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANREKMTQIMFETFNT 470
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 471 PAMXVAIQAVLSLTRSVVPTV--FVLDFGD 554
P++ I + S + P+ VL+ G+
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 201
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 4e-08
Identities = 23/84 (27%), Positives = 44/84 (52%)
Frame = +3
Query: 300 HGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 479
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 480 XVAIQAVLSLTRSVVPTVFVLDFG 551
+ QAV + T ++D G
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIG 157
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 4e-04
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPXE----HPVLLTEAPLNPKANREKMTQIMFE 458
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 459 TFNTPAMXVAIQAVLSLTRSVVPTVFVLDFG 551
P +A + ++ L + V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 30.3 bits (65), Expect = 0.20
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 323 IPVSDDSVFDGVFEGQDTSFALCSSPTYESFCPMPTITP*WRGLPTIEGNTARGASSPAK 144
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 143 PALHIP 126
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.35
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 248 PTYESFCPM-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 393 LLTEAPLNPKANREKMTQIMFETFN 467
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 251 SPTYESFC--PMPTITP*WRGLPTIEGNTARGASSPAKPAL 135
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 145 NRPCTYRSHCLLPTRQLP 92
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAG 153
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 10.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 380 LGGDTELIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFALCSSPTYESFCPMPTI 213
L G + + G+ PN VS +++FD + S L SP S+ MP+I
Sbjct: 346 LFGISSPLSSGVTPNQSFFPDVSGNNIFDVSRNNHEVSSPLIQSP--GSYVSMPSI 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,530
Number of Sequences: 5004
Number of extensions: 45414
Number of successful extensions: 143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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