Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0209
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 188 4e-48
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 188 4e-48
SB_56| Best HMM Match : Actin (HMM E-Value=0) 188 4e-48
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 188 4e-48
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 188 4e-48
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 3e-28
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 91 7e-19
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 79 2e-15
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 64 1e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 2e-07
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 45 4e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 1e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.48
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.5
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12) 29 2.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3) 27 7.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 188 bits (457), Expect = 4e-48
Identities = 89/101 (88%), Positives = 91/101 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP EHPVLLTEAPLNPKANRE
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KMTQIMFETFN+PAM VAIQAVLSL S T V+D GDG
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 159
Score = 123 bits (296), Expect = 1e-28
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 188 bits (457), Expect = 4e-48
Identities = 89/101 (88%), Positives = 91/101 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP EHPVLLTEAPLNPKANRE
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KMTQIMFETFN+PAM VAIQAVLSL S T V+D GDG
Sbjct: 118 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 158
Score = 120 bits (289), Expect = 8e-28
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 188 bits (457), Expect = 4e-48
Identities = 89/101 (88%), Positives = 91/101 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP EHPVLLTEAPLNPKANRE
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KMTQIMFETFN+PAM VAIQAVLSL S T V+D GDG
Sbjct: 118 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 158
Score = 121 bits (292), Expect = 3e-28
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 188 bits (457), Expect = 4e-48
Identities = 89/101 (88%), Positives = 91/101 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP EHPVLLTEAPLNPKANRE
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KMTQIMFETFN+PAM VAIQAVLSL S T V+D GDG
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 159
Score = 127 bits (307), Expect = 5e-30
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 188 bits (457), Expect = 4e-48
Identities = 89/101 (88%), Positives = 91/101 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANRE 434
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP EHPVLLTEAPLNPKANRE
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
KMTQIMFETFN+PAM VAIQAVLSL S T V+D GDG
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 159
Score = 123 bits (296), Expect = 1e-28
Identities = 54/62 (87%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 121 bits (292), Expect = 3e-28
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 353
AQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +3
Query: 426 NREKMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
N + M +IMFETFN+PAM VAIQAVLSL S T V+D GDG
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 121
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 99 bits (238), Expect = 1e-21
Identities = 47/102 (46%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPXEHPVLLTEAPLNPKANR 431
A R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NR
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120
Query: 432 EKMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
EKM ++MFE + + +AIQAVL+L + T V+D GDG
Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDG 162
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 255
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDE
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDE 60
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 90.6 bits (215), Expect = 7e-19
Identities = 44/75 (58%), Positives = 54/75 (72%)
Frame = +3
Query: 333 KIWHHTFYNELRVAPXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMXVAIQAVLSLT 512
K+W H F ++LRV + PVLLTEAPLNPK NRE+M Q+MFE+FN P M VA+QAV++L
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 513 RSVVPTVFVLDFGDG 557
S T V D GDG
Sbjct: 2189 ASGRTTGTVFDCGDG 2203
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 106 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/63 (58%), Positives = 46/63 (73%)
Frame = +3
Query: 369 VAPXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDF 548
V +HPVLLTEAPLNP+ NREK ++ FETFN PA+ +++QAVLSL + T VLD
Sbjct: 122 VRQVQHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDA 181
Query: 549 GDG 557
GDG
Sbjct: 182 GDG 184
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/87 (33%), Positives = 50/87 (57%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLLTEAPLNPKANREKMTQIMFETFNT 470
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 471 PAMXVAIQAVLSLTRSVVPTVFVLDFG 551
PA + +VL+ + V+D G
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSG 89
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 207
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +1
Query: 70 Y*FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 222
Y FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 691 YSFKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +3
Query: 447 IMFETFNTPAMXVAIQAVLSLTRSVVPTVFVLDFGDG 557
IMFE FN+PA+ VAIQAVLSL S T V D GDG
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDG 37
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -3
Query: 204 MAGPSDDRGEYGARSIISCETGLAHTGAIVYYQRGNFLV 88
MA +DD GE G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 285 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPXEHPVLL 398
K+PI H IV +WD ME+ W + LR P +H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 282 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--XEHPVLLTEAPLNPKANRE 434
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKIWHHTFYNE 362
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 94 EVAALVVDNGSGMCKAGFAGDDAPRAV 174
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
Length = 863
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 174 IPLDRRKAPPSGCDGRHGTERLVRRRRAQS--KRGILTLKYP 293
+P+DR AP G D + TE++V +++ +S K I YP
Sbjct: 67 VPVDRVTAPLRGTDMKKETEKVVLKKKEESLHKYQIFASNYP 108
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 179 GNTARGASSPAKPALHIPEPLSTT 108
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -1
Query: 344 MPNLLHVIPVSDDSVFDGVFEGQDTSFALCSSPTYESFCPMPTITP*WRGLPTIEGNTAR 165
+P+L+ +S+D+V GV + + + P+Y +F + + +P + GNT
Sbjct: 4245 IPSLVKQFNISNDTVNVGVVTYSASQQEIIALPSYNNFSDVEKLV---SKVPYLGGNTLS 4301
Query: 164 GASSPAKPALHIPE 123
GA+ H+P+
Sbjct: 4302 GAALNYLRWEHLPQ 4315
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 194 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 84
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3)
Length = 225
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 435 KMTQIMFETFNTPAMXVAIQAVLSLTRSVVPTVF 536
K + F+ FNT A+ AI ++ +T ++ T+F
Sbjct: 190 KTITVTFQKFNTIAITTAIIIIIIITNTITITIF 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,609
Number of Sequences: 59808
Number of extensions: 399437
Number of successful extensions: 1043
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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