Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0208
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.061
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   9.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.3  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 0.061
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 329 NVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRXLIFN 466
           +VPCGTSG  L +  ++ V  K  P S        T E ++  +FN
Sbjct: 225 SVPCGTSGNPLEWTGQVTVRKKRKPYSKFQ-----TLELEKEFLFN 265


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 215 LSGWSFITSYKSSCF 259
           +SG SF + YK+SC+
Sbjct: 380 MSGESFKSPYKASCW 394


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 215 LSGWSFITSYKSSCF 259
           +SG SF + YK+SC+
Sbjct: 380 MSGESFKSPYKASCW 394


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 202 MLVFIIGVELYYQL 243
           M+VF+IGV L + L
Sbjct: 136 MVVFLIGVSLSFNL 149


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 206 NMSFFYFMKGKMNRDPYSQNHNGQNRRL 123
           N+  + +MK K      SQ  NG  RRL
Sbjct: 111 NVPEYPWMKEKKTTRKSSQQENGLPRRL 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,742
Number of Sequences: 336
Number of extensions: 2845
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)