Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0208
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 92 3e-19
11_06_0595 - 25368114-25370051 28 5.6
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 28 5.6
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 28 5.6
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505 28 5.6
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 28 5.6
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 27 7.4
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241... 27 7.4
05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119 27 7.4
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979... 27 7.4
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 91.9 bits (218), Expect = 3e-19
Identities = 39/84 (46%), Positives = 60/84 (71%)
Frame = +2
Query: 257 FHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFT 436
FH+ +P +T ++ IQ V+N+PCGT GGV+I F++IEVVN+L + V + + N+
Sbjct: 183 FHVKLPWITQFEPIQ-------VRNIPCGTKGGVMISFDKIEVVNRLHKEFVHETLLNYG 235
Query: 437 AEYDRXLIFNKVHHELNQFCSAHT 508
YD+ I++K+HHE+NQFCSAH+
Sbjct: 236 VHYDKTWIYDKIHHEINQFCSAHS 259
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 180 LHKVEEGHVGVYYRGGALL 236
LH+V EGHVGVY+RGGALL
Sbjct: 157 LHQVPEGHVGVYWRGGALL 175
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 508 LHEVYIDLFDQID 546
L +VYIDLFDQID
Sbjct: 260 LQQVYIDLFDQID 272
>11_06_0595 - 25368114-25370051
Length = 645
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 508 GMGTTELIQFMVHFIENKXPV 446
G GT E+I+F V FIE+ P+
Sbjct: 330 GYGTEEVIEFCVEFIEDLRPI 350
>11_06_0227 +
21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 410 VLDMVRNFTAEYDRXLIFNKVHHELNQFCSAHTCTR 517
VLD++RN AE + +F+K+ HE+++ S + R
Sbjct: 498 VLDLIRNIIAEENFVKVFDKL-HEVHRLSSQRSTVR 532
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 508 GMGTTELIQFMVHFIENKXPV 446
G GT E+I+F V FIE+ P+
Sbjct: 617 GYGTEEVIEFCVEFIEDLRPI 637
>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
Length = 772
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 508 GMGTTELIQFMVHFIENKXPV 446
G GT E+I+F V FIE+ P+
Sbjct: 716 GYGTEEVIEFCVEFIEDLRPI 736
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 508 GMGTTELIQFMVHFIENKXPV 446
G GT E+I+F V FIE+ P+
Sbjct: 678 GYGTEEVIEFCVEFIEDLRPI 698
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 410 VLDMVRNFTAEYDRXLIFNKVHHELNQFCSAHTCTR 517
VLD+++N TAE + IF K+ HE+ + S T R
Sbjct: 507 VLDLIQNITAEGNFVKIFKKL-HEVCRLSSQRTNVR 541
>07_03_0375 +
17408815-17409035,17422820-17423477,17423780-17424161,
17424236-17424550,17424727-17425118,17432479-17432508
Length = 665
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 508 GMGTTELIQFMVHFIENKXPV 446
G GT E+I+F + FIE+ P+
Sbjct: 635 GCGTEEVIEFCIEFIEDLRPI 655
>05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119
Length = 248
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Frame = +2
Query: 257 FHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLI------YFERIEVVN 391
F M P TS Q + K VPC SGG+ YFE + V N
Sbjct: 123 FDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFN 173
>04_03_0965 -
21296608-21297165,21297332-21297682,21297781-21297965,
21298076-21298172,21298859-21299071,21299206-21299334,
21299442-21299567,21301280-21301999
Length = 792
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 206 WCLLSGWSFITSYKSSCFHMMIPLLTSY 289
+CLL+ SF++ +CF++ + L +Y
Sbjct: 596 YCLLTNQSFLSKASENCFNITLALFLTY 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,735
Number of Sequences: 37544
Number of extensions: 262572
Number of successful extensions: 489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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