Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0208
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   135   2e-32
U41510-5|AAK39384.3|  453|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  135 bits (326), Expect = 2e-32
 Identities = 60/96 (62%), Positives = 74/96 (77%)
 Frame = +2

Query: 221 GWSFITSYKSSCFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLD 400
           G + + +  +  +HM IP LT+ K++Q TLQTDE  NVPCGTSGGVLIYF+RIEVVN L 
Sbjct: 35  GGALLKAVTNPGYHMHIPFLTTVKSVQVTLQTDEATNVPCGTSGGVLIYFDRIEVVNFLS 94

Query: 401 PQSVLDMVRNFTAEYDRXLIFNKVHHELNQFCSAHT 508
             SV  +V+N+T +YDR LIFNKVHHE+NQFCS HT
Sbjct: 95  QDSVYAIVKNYTVDYDRPLIFNKVHHEVNQFCSVHT 130



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/35 (60%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
 Frame = +3

Query: 135 LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALL 236
           LA+ + A+ + +   +LHK+EEGHVGVYYRGGALL
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALL 39



 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 508 LHEVYIDLFDQID 546
           L EVYIDLFD+ID
Sbjct: 131 LQEVYIDLFDKID 143


>U41510-5|AAK39384.3|  453|Caenorhabditis elegans Hypothetical
           protein ZC449.2 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = +2

Query: 236 TSYKSSCFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVL 415
           +S+   C   + P+   YK     LQT ++  +P   +   L  FE  +     +PQ + 
Sbjct: 101 SSWDGQCQDKIAPI-RGYKQNIQQLQTPQISTLPKAQTIPNLPKFENSDFPKDPNPQVIR 159

Query: 416 DMVRNFTAEYDRXLI 460
           D VR     ++  ++
Sbjct: 160 DNVRKAPVHFENSIV 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,456
Number of Sequences: 27780
Number of extensions: 250288
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)