Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0208
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...   113   5e-26
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ...    29   2.7  
At1g13600.1 68414.m01595 bZIP transcription factor family protei...    29   2.7  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score =  113 bits (273), Expect = 5e-26
 Identities = 45/84 (53%), Positives = 65/84 (77%)
 Frame = +2

Query: 257 FHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFT 436
           FH+ +P +T+Y+ +Q TLQTD+V+++PCGT GGVLI FE+IEVVN+L    V D + N+ 
Sbjct: 73  FHLKLPFITNYEPVQVTLQTDQVRDIPCGTKGGVLITFEKIEVVNRLRKDFVYDTLLNYG 132

Query: 437 AEYDRXLIFNKVHHELNQFCSAHT 508
             YD   I++K+HHE+NQFCS+H+
Sbjct: 133 VNYDNTWIYDKIHHEINQFCSSHS 156



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +3

Query: 120 DQSSILAI--VILAVGVTVHFS---LHKVEEGHVGVYYRGGALLPVTSQAVF 260
           D SSIL    V  A+   V F    +H+V EGHVG Y+RGGALL + ++  F
Sbjct: 22  DISSILIAFGVFAAIAALVMFPSSLVHQVPEGHVGAYWRGGALLNIITEPGF 73


>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 271

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 464 NKVH-HELNQFCSAHTCT 514
           +++H H L QFC AHTCT
Sbjct: 191 SRLHEHFLRQFCDAHTCT 208


>At1g13600.1 68414.m01595 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 196

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 221 PIINTNMSFFYFMKGKMNRDPYSQNHNGQN 132
           P   T+ S FY + G +N + YS + NGQ+
Sbjct: 35  PSSPTSCSSFYHLNGLINNNNYSSSSNGQD 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,775
Number of Sequences: 28952
Number of extensions: 225218
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)