Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0207
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.007
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           28   5.9  
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   7.9  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = -3

Query: 252 YGPPSGFPLTST*PGIVHHLSGPSICA 172
           Y PP  FPL S   GIVHHLSGP+ CA
Sbjct: 3   YEPPPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = -2

Query: 250 RSSIRVSPDFDLTRHSSPSFGSQHLCS 170
           R+S RVS  F L RHSSPSFGSQ + S
Sbjct: 38  RASTRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -2

Query: 307 ISLSPLYPVPTIDLHVR 257
           ISLSPLYP  TIDLHVR
Sbjct: 38  ISLSPLYPNLTIDLHVR 54


>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 252 YGPPSGFPLTST*PGIVHH 196
           Y PP  FPL S   GIVHH
Sbjct: 3   YEPPPEFPLASPYSGIVHH 21


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 178 NAGTRKMVNYAWSGRSQGKP*WRTVXF*RANRSSE 282
           NA  RK + + W       P WRTV    AN + E
Sbjct: 75  NAARRKEIRFTWGTDFLPSPRWRTVFLIGANDNQE 109


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 178 NAGTRKMVNYAWSGRSQGKP*WRTVXF*RANRSSE 282
           NA  RK + + W       P WRTV    AN + E
Sbjct: 79  NAARRKEIRFTWGTDFLPTPRWRTVFLIGANDNQE 113


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 204 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 112
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,909
Number of Sequences: 59808
Number of extensions: 230838
Number of successful extensions: 370
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)