Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0206
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   2.7  
At1g40133.1 68414.m04768 hypothetical protein                          29   2.7  
At1g12080.2 68414.m01397 expressed protein                             28   3.6  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    28   4.8  
At5g61040.1 68418.m07660 expressed protein                             27   6.3  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   6.3  
At2g30500.1 68415.m03715 kinase interacting family protein simil...    27   6.3  
At5g64870.1 68418.m08160 expressed protein                             27   8.3  
At5g04870.1 68418.m00510 calcium-dependent protein kinase isofor...    27   8.3  
At3g05900.1 68416.m00664 neurofilament protein-related similar t...    27   8.3  
At1g75490.1 68414.m08770 DRE-binding transcription factor, putat...    27   8.3  

>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 350 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 448
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 327 QTNNFIVATKEALDAKMETHEEKREAYINE 416
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At1g12080.2 68414.m01397 expressed protein
          Length = 138

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 55  VEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQETXKAA 234
           VE  E + + TE + +E  +     EVI   PV     ++A+   +TP+V E ++  +  
Sbjct: 62  VEEAEKKDEETEKKTEEKDE---KTEVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVV 118

Query: 235 EERR 246
           EE++
Sbjct: 119 EEKQ 122


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
 Frame = +3

Query: 354 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRLTLEQQTAEV 494
           KE  +  ++  ++K E   +EL      R R+KD LEGV            +L+++  E+
Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548

Query: 495 YKAIE 509
           YK +E
Sbjct: 549 YKKVE 553


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 321 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 464
           S   ++F V  +E LD   +E  EEK   ++NE+  +L   +  VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 55  VEAMEVETKSTEIRCQEMSKGGLAYEV 135
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At2g30500.1 68415.m03715 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 517

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73  ETKSTEIRCQEMSKGGLAYEVI-LAEPVGVPVPRRADSPEKTPSVEEIQETXKAAEERRR 249
           E KS ++  ++  +  +A +V+ L E + +   +     ++T S++   E  KAAEE+ +
Sbjct: 242 EQKSVDLDKEDTKEDAVATKVLALEEELSIAKEKLQHFEKETYSLKNELEIGKAAEEKLK 301

Query: 250 SLK 258
           SL+
Sbjct: 302 SLQ 304


>At5g64870.1 68418.m08160 expressed protein
          Length = 479

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 10  SSDAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAE 147
           ++ AV L  +  + KVE M   T++ +++ + +SK  + YE  + E
Sbjct: 268 AAKAVALREAELQTKVEKMNALTRTEKLKAEFLSKASVEYETKVQE 313


>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform
           AK1 (AK1) identical to calcium-dependent protein kinase,
           isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 610

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 369 AKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV-YKAIEIR*PQLPXSVTR 545
           A M   +   EA   ELRSRL D ++     ++T+ +   +V  K  EIR    P ++  
Sbjct: 31  ASMSNGDIASEAVSGELRSRLSDEVQNKPPEQVTMPKPGTDVETKDREIRTESKPETLEE 90

Query: 546 TS 551
            S
Sbjct: 91  IS 92


>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 88  EIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEE-IQETXKAAEERR 246
           E +  ++S+     EV   EPV V   + A+  E+ P+VE  ++E  K  EE +
Sbjct: 147 ETKIVDVSESTDEAEVQQVEPVDVQPVKDAEKAEEKPTVESVVEEETKDREETK 200


>At1g75490.1 68414.m08770 DRE-binding transcription factor, putative
           similar to DREB2A GB:BAA33794 GI:3738230 from
           [Arabidopsis thaliana] (Plant Cell 10 (8), 1391-1406
           (1998))
          Length = 197

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 239 SSAAFXVSWISSTEGVFSGESARRGTGTPTGSASITSYARPPFDISWQRISVDL 78
           SS A   +  S+T G  S +S      +P  S  ++S  R   +ISW+ I+VDL
Sbjct: 100 SSPASQTTPSSNTGGKSSSDSE-----SPCSSNEMSSCGRVTEEISWEHINVDL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,419,812
Number of Sequences: 28952
Number of extensions: 157338
Number of successful extensions: 677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)