Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0205
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 33 0.12
11_06_0289 - 21969248-21973516 32 0.27
11_06_0185 + 21018045-21022307 32 0.27
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 1.5
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 3.4
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 28 4.4
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 28 5.9
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 27 7.7
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 7.7
05_01_0242 + 1804183-1806096 27 7.7
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 7.7
>07_01_0463 + 3502708-3503535
Length = 275
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +3
Query: 333 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 500
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQ 236
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 366 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 500
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVE 431
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 366 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 500
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVE 431
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 302 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 445
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 327 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 461
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Frame = +2
Query: 275 DGRHCSEDGQDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQ---RAALPSQG 445
D R DG D+ G+ QRAD R+ RR D D G R+ P +
Sbjct: 199 DSRGRRSDGDDQKGICREQRADH-DDRKDSARERRADRDESNGESGRSSRRGRSVSPEEH 257
Query: 446 SS*GR*EDQVDPGTADRGSVQAIEDKM 526
GR E Q S ED M
Sbjct: 258 RHRGRHESQSHQSPRSSRSAARGEDFM 284
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 378 AKMETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 500
A+ E++ K + N S L++H++ +EKT +T Q++ E
Sbjct: 83 AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 527 SSYLRWLVHFRGLLFQGQPGLLNALKMILETGA 429
S+ RW +GLL G G++ A +I ETGA
Sbjct: 314 SAQPRWFSTSKGLLGAGPSGIMAADAIITETGA 346
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 278 GRHCSEDGQD---RGGVPHPQRADE*LHRRHQGGSRRQDGDP 394
GRH GQ RGG PH QRA R GG Q G P
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKP 53
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 522 LSSMACTLPRSAVPGSTWSSQRPQDDP*DGSAAR 421
LS+ T R+ +P ++RP+ DP G +AR
Sbjct: 19 LSTAPATSHRNKIPADPSRTERPRPDPGSGDSAR 52
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 449
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,050
Number of Sequences: 37544
Number of extensions: 233306
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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