Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0205
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   2.8  
At1g40133.1 68414.m04768 hypothetical protein                          29   2.8  
At5g61040.1 68418.m07660 expressed protein                             27   6.5  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   6.5  

>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 359 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 457
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 336 QTNNFIVATKEALDAKMETHEEKREAYINE 425
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 330 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 473
           S   ++F V  +E LD   +E  EEK   ++NE+  +L   +  VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 64  VEAMEVETKSTEIRCQEMSKGGLAYEV 144
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,763,570
Number of Sequences: 28952
Number of extensions: 162062
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)