Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0204
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0567 - 4178440-4178530,4179248-4180311                           33   0.20 
04_04_1319 - 32615923-32615979,32616431-32616495,32616654-326167...    28   5.7  
01_06_1024 + 33899628-33899970,33902822-33902850                       28   5.7  
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850...    27   7.5  
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    27   7.5  

>01_01_0567 - 4178440-4178530,4179248-4180311
          Length = 384

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
 Frame = +1

Query: 172 FDRPSEPCFMQKGEEKAVFDIPDNYYPEXTSVCQM--------L*AT-GSVATRXRMIPI 324
           FDRP +  F+     +  FD+PDN+     SV  +        L A+ G+++     I +
Sbjct: 189 FDRPLDAIFLNHNRFR--FDLPDNFGNSPVSVIVLAHNSFGGCLPASLGNMSGTLNEILL 246

Query: 325 RNIALPNLDLPMELPYNEQFSLFVPKHRQMAGKLIDIFMGMRDVEDL 465
            N  L +  LP E+    + ++F     ++AG L     GMR VE L
Sbjct: 247 INTGLSSC-LPPEVGMLREVTVFDVSFNRLAGPLPSAVAGMRKVEQL 292


>04_04_1319 -
           32615923-32615979,32616431-32616495,32616654-32616732,
           32616817-32616946,32617478-32617550,32617634-32617688,
           32617800-32617846,32619232-32619421
          Length = 231

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 464 RSSTSRIPMKISISFPAICLCLGTNKENC 378
           RSST+R+P++ ++   A  L LG+++ +C
Sbjct: 22  RSSTARVPVRFAVEKFAQPLVLGSDRRSC 50


>01_06_1024 + 33899628-33899970,33902822-33902850
          Length = 123

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 283 LIAFDTRWYXPGSNCQEYRILPSL 212
           ++AF  + + PGSNC  YR+  SL
Sbjct: 99  VVAFCKKPFQPGSNCGSYRVPASL 122


>07_01_1004 +
           8500584-8501881,8502194-8502402,8503024-8503266,
           8503381-8503697,8503891-8504250
          Length = 808

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 310 GXAXLPNLLLIAFDTRWY 257
           G A LPNL+++A D  W+
Sbjct: 390 GIANLPNLIILALDDNWF 407


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 467 WRSSTSRIPMKISISFPAICLCLGT 393
           WR++ S  P   + +FP +CL L T
Sbjct: 80  WRAALSSFPSVYTFNFPPLCLKLNT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,123
Number of Sequences: 37544
Number of extensions: 229602
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)