Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0204
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   29   1.9  
SB_22106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 128 QIKRCLTPRKTCYCSSTVPQSH-----ASCKREKRRQYSIFLTITTRXVP 262
           Q+++C   + T YCS   P+SH     A CK +K  + S  L ++T   P
Sbjct: 17  QLQKCSRCKSTMYCSKDCPRSHWKHHKAICKAKKHSKDS-KLDVSTTTAP 65


>SB_22106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 143 LTPRKTCYCSSTVPQSHASCKREKRRQYSIFLTITTRXVPACV 271
           L P+       T   SH SC+R     Y IF T+    +PA +
Sbjct: 162 LLPQMGWTNGKTYISSHGSCRRPLSDDYLIFSTVAHFCIPAAI 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,389
Number of Sequences: 59808
Number of extensions: 264939
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)