Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0204
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    31   0.42 
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z81486-2|CAB03984.1|  461|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    28   5.1  
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -1

Query: 405  VFRDEQGELLV-VGQLHGQVQIGQGNVPDGYHAAPRXYRTCCL*HLTHAGTFRVVIVRNI 229
            V   +Q ELL+ V Q +  VQ+G  +  DG+      +RT    + T +G+F VV +RN+
Sbjct: 1273 VLNSDQIELLIDVSQCNSNVQVGIASSTDGFIPPISDFRTVI--NTTSSGSF-VVNLRNL 1329

Query: 228  EYCLLFSL 205
            +  L  S+
Sbjct: 1330 KSHLALSI 1337


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 125 NQIKRCLTPRKTCYCSSTVPQSHASCKREK 214
           NQ  + L  RKTC CSST+  + +S   E+
Sbjct: 654 NQATQFLWCRKTCLCSSTISTTTSSSNTEE 683


>Z81486-2|CAB03984.1|  461|Caenorhabditis elegans Hypothetical
           protein C53A5.3 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 DLPMELPYNEQFSLFVPKHR 408
           ++P ELPYN+ F  F P +R
Sbjct: 327 EVPNELPYNDYFEYFGPNYR 346


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 149 PRKT-CYCSSTVP-QSHASCKREKRRQYSIFLTITTRXVPAC 268
           P++T C C +T P Q+  SC +  ++Q   +L  T++  PAC
Sbjct: 49  PQETSCSCQNTAPVQTSCSCAQPVQQQ--TYLVPTSQCAPAC 88


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 163 LLFFDRPSEPCFMQKGEEKAVFD 231
           + + D+PSE  F+ KGE KA+ D
Sbjct: 232 VFYTDKPSESKFVSKGELKAIED 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,764,161
Number of Sequences: 27780
Number of extensions: 198990
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)