Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0204
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...   101   5e-24
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score =  101 bits (242), Expect = 5e-24
 Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
 Frame = +1

Query: 139 MSDAKKNLLLFFDRPSEPCFMQKGEEKAVFDIPDNYYPEX-TSVCQML*ATGSVATRXRM 315
           M+  K  +L  FDRPSEP ++ KG+ K  FDIP +Y P+   SV   +       T  ++
Sbjct: 1   MASDKSGILYLFDRPSEPVYVPKGDNKVAFDIPPDYLPDRYRSVATQVFNRFGDDTESKL 60

Query: 316 IPIRNIALPNLDLPMELPYNEQFSLFVPKHRQMAGKLIDIFMGMRDVEDLQS 471
            P++ I LP+L +PM+L   + FSLF+P HR++A +LIDIFMGMR  ED  S
Sbjct: 61  -PVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAARLIDIFMGMRTYEDFLS 111



 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +3

Query: 510 FNYCLSVAILHRSD 551
           F Y LSVAILHR D
Sbjct: 125 FIYALSVAILHRPD 138


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 516 YCLSVAILHRSD 551
           Y LSVA++HR D
Sbjct: 140 YALSVAVIHRPD 151


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 516 YCLSVAILHRSD 551
           Y LSVA++HR D
Sbjct: 140 YALSVAVIHRPD 151


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 366 QLHGQVQIGQGNVPDGYHAAPRXYRTC 286
           QL+  VQ G G+ P   H +     TC
Sbjct: 266 QLNSDVQPGHGSPPVKQHRSSSASTTC 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,947
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)