Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0204
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25280.2 68418.m02999 serine-rich protein-related contains so...    29   2.1  
At5g25280.1 68418.m02998 serine-rich protein-related contains so...    29   2.1  
At1g68380.1 68414.m07811 expressed protein contains Pfam profile...    29   2.7  
At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family...    28   3.6  
At1g78760.1 68414.m09179 F-box family protein contains F-box dom...    27   8.3  

>At5g25280.2 68418.m02999 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 333 NVPDGYHAAPRXYRTCCL*HLTHAGTFRVVIVRNI 229
           N P  +H  P   R C     TH G+FR  + +N+
Sbjct: 111 NKPSNHHKIPDSRRRCMCSPTTHPGSFRCSLHKNV 145


>At5g25280.1 68418.m02998 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 333 NVPDGYHAAPRXYRTCCL*HLTHAGTFRVVIVRNI 229
           N P  +H  P   R C     TH G+FR  + +N+
Sbjct: 111 NKPSNHHKIPDSRRRCMCSPTTHPGSFRCSLHKNV 145


>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 392

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 247 SNCQEYRILPSLLPFA*SMALRDGRRTVTGFSW 149
           S C +   +P+LL    S+ LR+  RT+T   W
Sbjct: 293 SRCPDEHYIPTLLNMRPSLGLRNANRTLTWTDW 325


>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; contains some similarity to
           transcription factor [Danio rerio]
           gi|15617376|emb|CAC69871
          Length = 367

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 270 SNAISNRFGSXAXPHDTHQEHCPAQSGPAHGAA 368
           S + S  + S A PH  HQ H P  + P   AA
Sbjct: 199 SGSASGPYQSSAIPHQPHQPHQPTIAPPVAAAA 231


>At1g78760.1 68414.m09179 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 452

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 465 EIFYVTHSHEDINQLSCHLPVFRD 394
           ++F  +H+ E I+ L C LP+FR+
Sbjct: 299 KLFISSHTLEVIHDLGCELPLFRN 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,087,756
Number of Sequences: 28952
Number of extensions: 184659
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)